Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01598 ATGGATGGTATACCTAGCAACGCTCAGATTTCATTTGCTGCATCGTCTATGTTTCCTGGCTTCAAGTTTTCCCCAACCGACGAGGAATTGATTTCCTATTACTTGAGGAAAAAGTTGGATGGTCAAGAAGAAAGCGTTCAAGTGATTTCCCAGCTCGAGATCTGGAGATACGAGCCTTGGGATTTGCCAGCCAAATCAGTGATTGAGTCCGAAAATGAGTGGTTCTTCTTCTCACCTCGTGGAAGAAAATATCCAAATGGCTCACAAAGTAAGAGGGCAACTGATTCTGGTTATTGGAAAGCCACTGGGAAAGAACGAAATGTAAAGGCAGGTGCACAAGTGATTGGTACAAAGCGAACTCTAGTGTTCCACTTGGGTCGTGCACCAAAGGGGGAAAGAACAGAGTGGATGATGCATGAGTATTGCACAATTAATAAAGACCAGGATTCCTTGGTCATCTGTCGTCTCAGGAGGAATCCAGAGTTCCGATCAAATGATGCATCAAATCGAGGTTCTTCCAGTCAAAGGAACATAGTTACTTCACTCGATAGCAGTGTTGCGTCTGATGGAGCCCTTGATCAGGGTACTCCTATGTCTGATGCAGCCCTTGATCAGAGAAGTGATGGTAAGCGGGAAAAAGAAGCTGGATGCAGCAGTAATGATTCTTATACTATGGAGCAAATTGATTCTGCATCTGAACCCAACCTGAAACTTAAAACAGACGAAGAGGATTATTTTGCTGATATACTGAGGGATGAAATTGTGAAGCTAGATGATTCAGGAACTACCATGCTCCAATCGATGCCAATGGGTGCATTTCGAGAGTTGGTGAAGAAGAATGATGTTGAATCTTCAACGTGGTCAAGGCCATCCCACAAGTCGGAACAGCAAGCTTCGGAAGATTCTGCACAATTAACCACGAGTGAGCCACCTCCTGTCCAAGATAATCTTATTACAGGAGAAGCATATCCAAACCACAGAGCAGCTGTGCAGCAAAGACTACGATGA 1008 0.4435 MDGIPSNAQISFAASSMFPGFKFSPTDEELISYYLRKKLDGQEESVQVISQLEIWRYEPWDLPAKSVIESENEWFFFSPRGRKYPNGSQSKRATDSGYWKATGKERNVKAGAQVIGTKRTLVFHLGRAPKGERTEWMMHEYCTINKDQDSLVICRLRRNPEFRSNDASNRGSSSQRNIVTSLDSSVASDGALDQGTPMSDAALDQRSDGKREKEAGCSSNDSYTMEQIDSASEPNLKLKTDEEDYFADILRDEIVKLDDSGTTMLQSMPMGAFRELVKKNDVESSTWSRPSHKSEQQASEDSAQLTTSEPPPVQDNLITGEAYPNHRAAVQQRLR* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01598 335 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Pte1g01598 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 251 - -
Pte1g01598 335 MobiDBLite consensus disorder prediction 218 234 - -
Pte1g01598 335 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Pte1g01598 335 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Pte1g01598 335 Gene3D NAC domain 26 163 IPR036093 GO:0003677|GO:0006355
Pte1g01598 335 MobiDBLite consensus disorder prediction 185 236 - -
Pte1g01598 335 MobiDBLite consensus disorder prediction 283 335 - -
Pte1g01598 335 MobiDBLite consensus disorder prediction 289 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01598 Pte-Chr1 37627540 37630088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01598 8 268 NAC Transcription Factor Family AT2G27300 50.758 1.33e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte1g01598 NAM 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01598 - - tpra:123896537 348.206