Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01588 ATGGAGCCATTATGTGACTTCTGTGGGGTGGTAAGAGCAGTTGTGTATTGCAAATCGGATGCGTCTCGTCTCTGCTTGCAATGCGATGGATGTGTGCACTCTGCCAATTCTTTGTCACGCAGGCATCAGCGTTGGCTTCTATGCGACAAATGCAATGCTCAACCTTCGACTATGAGGTGCATGGATGATAAGATTTCTCTTTGTCAAGCTTGTGATTGGGATGGAAATGGCAATGGGTGTTCAATCATGGGTCACAGGCATCAGCCATTAGAGTCTTATACGGGCTGTCCTAGTTTGCCTGAGTTGTCAAGGATGTGGTCTTTTTTTCTTGATGGGTCTTGTTCAACTGACTTTGAGAACAACAACAGTGATAACCTCTGGGGTTTACTTGGTACATTGCCGATGAATGAGAATTGCAATACTGATTATTGTCTGAAACGAGAAGACAACGATGATCCGTTTGGTTTGGTCGCTAGCAAAATGAATGAAATCGAAGCATACATTAAATCGGAACCATGGGTTGTGCAACCTTCGACAATCCAACCGAATCCAAATAATTTGGCGTACTGCAAAGGTCAAAGTCTTAAATTCTGTGGGGACACAAGCCTACCAGAGGGGTCTAATTTCAAAGAATTGACGATTCAGAGCGATGATCTTTGTCAGGGTCTTAATATAGATGATGTGTCCTTGGACTTTGGCAACGAAGACGAAATATTTAGTTATTCTCAAGGTCCTAACAAATACACATATGAAGATGGAGGAATGAATTGTCTACTAATGGAAAAGAAAGGTTCTCTCGCAGAATCCAAAGGCCCAGTTGAAAATGCCAGAGGGGCATGTAGGATGGGTGGTACAACTAGTATAATGCAGCCAATGAATGGTATTAATGGCAGTCGCATGCTTATGAATGCCAGCTGCAATAGAAGCATCAACCTGGGATTCCCTCCTGCACCTGGAGGTCCTGTTTCACTTACATTGTCCAACATCACTGGTGAAAGTAGTGCTGCTGATTATCAAGATTGTGGATTGTCACCAGTGTTTCTCACTGGTGAATCCCCATGGCAACCGAATTTGGAGCCAACTTGCCCACAAGCCAGAGATAAAGCTAAAATGAGATATAACGAGAAAAAGAAGACTCGCACATTTGGGAAACAAATTAGATATGCATCTCGCAAAGCAAGAGCTGATACTAGAAAACGCGTGAAAGGAAGATTTGTGAAAGCAGATGAAGCATATGACTATGATCCTCTTGTGACAAGGAATACATGA 1269 0.4295 MEPLCDFCGVVRAVVYCKSDASRLCLQCDGCVHSANSLSRRHQRWLLCDKCNAQPSTMRCMDDKISLCQACDWDGNGNGCSIMGHRHQPLESYTGCPSLPELSRMWSFFLDGSCSTDFENNNSDNLWGLLGTLPMNENCNTDYCLKREDNDDPFGLVASKMNEIEAYIKSEPWVVQPSTIQPNPNNLAYCKGQSLKFCGDTSLPEGSNFKELTIQSDDLCQGLNIDDVSLDFGNEDEIFSYSQGPNKYTYEDGGMNCLLMEKKGSLAESKGPVENARGACRMGGTTSIMQPMNGINGSRMLMNASCNRSINLGFPPAPGGPVSLTLSNITGESSAADYQDCGLSPVFLTGESPWQPNLEPTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKADEAYDYDPLVTRNT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01588 422 Pfam CCT motif 366 408 IPR010402 GO:0005515
Pte1g01588 422 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte1g01588 422 CDD Bbox1_BBX-like 4 47 - -
Pte1g01588 422 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
Pte1g01588 422 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Pte1g01588 422 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01588 Pte-Chr1 37567496 37569077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01588 1 416 C2C2-CO-like Transcription Factor Family AT3G21880 41.330 2.12e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte1g01588 CCT 1.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01588 - - qsa:O6P43_028700 510.76