Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01578 ATGCGAAATATGCCAGCCGGGATTATGATTCCGGTGAGAAATATACCCTCAATGATTGGAAGGAACGGAAGCTTTGGTGGGTATGGATCGTCCTCAGCCTCAGGGCTCACTCTTGGTCAGCCAAACATAATGGAAGGTCAGCTCCAATCACTAGACATGACTCAAAATACTTCAGAGAGTGACATTCCCAGAATCAGAGATGATGACTTCGACAGTACTACCAAGTCCGGTAGCGAAAACCATGAAGCTGCCTCCGGCGATGACCAAGACCCACGTCCTAATAAGAAGAAGCGCTATCATCGTCACACTCAACATCAGATCCAGGAAATGGAAGCATTTTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGAAAGGAACTGAGCCGAGAGCTAGGGTTGGAGCCACTTCAAGTCAAGTTTTGGTTCCAGAACAAACGCACACAGATGAAGACGCAACATGAGCGTCAAGAGAATGCGCAACTTAGGGCAGAGAACGAAAAGCTCCGTGCTGATAACATGAGGTTCAGAGAAGCTCTTAGCAACGCTTCTTGTCCCAACTGCGGTGGACCAACCGCTATAGGAGAAATGTCATTTGATGAGCATCATCTCAGACTGGAAAATGCCCGGTTGAGAGAAGAGATTGATAGGATCTCAGCCATTGCTGCTAAGTACGTAGGAAAGCCTGCTTTGAGCTATCCACTTCTCTCGTCTCCAATCCCTCCACGACCACTTGAGCTCGGTGGCAGTCCATTTGGAGGTCAGCCTAGCATTGGTGGCGATATGTATGGAGCTGGAGATCTTCTTAGGTCAATTACTGCACCCACCGAAGCAGATAAACCTGTAATCATTGAGCTGGCTGTGTCGGCTATGGAGGAACTTATCAGAATGGCACAAATGGGAGAGCCTTTATGGATGACAAGCCTTGATGGTACTAGCTCTGAACTAAACGAAGACGAATACATCAGGTCATTTCCTAGAGGCATTGGCCCTAAACCCACTGGCTTTCGATGCGAAGCTTCAAGGGAGACTGCTGTGGTGATCATGAATCATATTAACCTCGTCGAGATCCTAATGGATGTGAACCAATGGTCTACTGTATTCTCTGGTATCGTCTCTAGGGCAATGACTCTAGAAGTTCTGTCAACTGGGGTGGCTGGCAATTACAACGGCGCCCTACAAGTGATGACTGCAGAGTTCCAGGTGCCCTCCCCCCTTGTCCCAACCCGTGAGAGTTATTTCGTTAGGTACTGTAAACAGCATACTGAAGGGACTTGGGCGGTGGTAGATGTATCCTTGGACAATTTGCGACCCAGTCCTGTAGTGAGATGTCGAAGAAGACCTTCTGGTTGTTTAATCCAAGAAATGCCCAATGGATACTCCAAGGTTACCTGGGTCGAGCATGTAGAGTTGGATGACAGAGGCGTTCACAATCTATACAAACAGCTAGTCAGCTCGGGTCATGCATTCGGGGCAAAACGTTGGATTGCTACATTAGATCGACAATGCGAGCGCCTCGCTAGTGCCATGGCTAGCAACATTCCCACCGGAGATGTTGGCGTAATAACAAATCAAGAAGGAAGGAAAAGTATGTTGAAACTGGCTGAGAGAATGGTGATCAGCTTTTGTGCTGGTGTGAGTGCCTCCACTGCACATACTTGGACAACTCTATCAGGAACAGGCGCTGATGATGTAAGAGTTATGACCCGGAAGAGTATTGATGATCCAGGTAGACCTCCGGGCATTGTTCTCAGTGCTGCCACTTCTTTCTGGCTTCCTGTTCCACCCAAAAGGGTTTTCGATTTCCTCCGCGATGAAAACTCAAGAAGTGAGTGGGACATTCTTTCAAATGGGGGAGTTGTTCAAGAAATGGCACATATAGCTAATGGCAGAGACACAGGGAATTGTGTGTCTCTTCTAAGAGTGAACAGTGTGAATTCAAGCCAGAGCAACATGTTGATATTGCAAGAGAGTTGCACAGACCCAACTGGATCATTTGTTATTTATGCTCCTGTTGATATTGCTGCCATGAATGTGGTCCTCAATGGTGGTGACCCTGATTACGTGGCGCTTCTTCCTTCCGGCTTCGCTATTCTCCCTGATGGAACTGGTATTGGCGAAGGTAACAGTGGTGGATCTCTCCTGACTGTTGCATTTCAAATTCTAGTTGATTCCTTCCCAACAGCTAAGCTTTCTCTTGGATCCGTTGCAACTGTTAACAATCTCATCGCTTGCACTGTTGAGAGAATTAAGTCAGCTTTATCGTGTGAACCTGCTTGA 2280 0.4737 MRNMPAGIMIPVRNIPSMIGRNGSFGGYGSSSASGLTLGQPNIMEGQLQSLDMTQNTSESDIPRIRDDDFDSTTKSGSENHEAASGDDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENAQLRAENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPALSYPLLSSPIPPRPLELGGSPFGGQPSIGGDMYGAGDLLRSITAPTEADKPVIIELAVSAMEELIRMAQMGEPLWMTSLDGTSSELNEDEYIRSFPRGIGPKPTGFRCEASRETAVVIMNHINLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHTEGTWAVVDVSLDNLRPSPVVRCRRRPSGCLIQEMPNGYSKVTWVEHVELDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMASNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSVNSSQSNMLILQESCTDPTGSFVIYAPVDIAAMNVVLNGGDPDYVALLPSGFAILPDGTGIGEGNSGGSLLTVAFQILVDSFPTAKLSLGSVATVNNLIACTVERIKSALSCEPA* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01578 759 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Pte1g01578 759 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Pte1g01578 759 CDD START_ArGLABRA2_like 280 504 - -
Pte1g01578 759 Gene3D - 339 502 IPR023393 -
Pte1g01578 759 SUPERFAMILY Bet v1-like 524 751 - -
Pte1g01578 759 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 754 IPR042160 -
Pte1g01578 759 Gene3D - 81 170 - -
Pte1g01578 759 CDD homeodomain 96 154 IPR001356 GO:0003677
Pte1g01578 759 SUPERFAMILY Bet v1-like 276 507 - -
Pte1g01578 759 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Pte1g01578 759 Pfam START domain 286 505 IPR002913 GO:0008289
Pte1g01578 759 ProSiteProfiles START domain profile. 276 508 IPR002913 GO:0008289
Pte1g01578 759 FunFam Homeobox-leucine zipper protein GLABRA 2 285 504 - -
Pte1g01578 759 SMART HOX_1 94 157 IPR001356 GO:0003677
Pte1g01578 759 Coils Coil 147 179 - -
Pte1g01578 759 SMART START_1 285 505 IPR002913 GO:0008289
Pte1g01578 759 MobiDBLite consensus disorder prediction 61 94 - -
Pte1g01578 759 SUPERFAMILY Homeodomain-like 83 153 IPR009057 -
Pte1g01578 759 FunFam Homeobox-leucine zipper protein HDG1 82 169 - -
Pte1g01578 759 MobiDBLite consensus disorder prediction 53 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01578 Pte-Chr1 37373822 37380265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01578 65 760 Homeobox Transcription Factor Family AT1G05230 80.769 0.0 1170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte1g01578 START 1.3e-61 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01578 K09338 - cave:132180993 1336.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01578 1 37373822 37380265 Pte1g01578 1 37373822 37380265 RCT