Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01555 ATGCCGGATATAAGGAAGTGGTTCATGAAATCACACGACAAGGGTAATGCCAATGCCAGCAATTCTAACACAACAAACCAGCCTAAACCTTATGTCCCTCCAGCAAACTCACAACCTCAAAAAGCGGCTCGAGGATGCCAAGAGAGTTCAGGAAGGAGGAAAACAAGCAAATACTTTTCTGCTGACAAACAAAAGCCAAAAGAAGAAACAGAGGAACTTCCTAACAAAAGGAAGCAAAAGGACAATGATGAATTGGTCAAGCCCCCTCCTTTGAAGAAAATTCACAAAGTTCAAGATGATGATGATGGGGACGACGACTTTGTCATGCCCAGAGCTGCTGCAAAGAATTCAGTAGTTACCACTCCAAGTAAGAAATTGAAGAGTGGATCTGGGAAGGGAGTTCCGCAGAAATCTGCAAATGTTGAGGAGGGCGAAGAAGATGATGAAAAAGATGATGCATCACCTCTGAAGTCTACTGGAAGGGGTCGTGGTGGAAGGGTTTCATCAGCAGCACCAGCTGGTGGCCGAGGCAGAGGTGGATTTATGAATTTTGGTGAAAGAAAAGAACCTCCAAATAAAGGACAAAAGGAAATTCCTCAAGGTGCTCCAGATTGTTTAGCTGGTCTAACTTTTGTGATTAGTGGAACACTAGACAGTTTGGAGCGAGAAGAAGCAGAAGATTTGATAAAACGCCATGGCGGTCGTGTCACTGGATCTGTTAGCAAAAAGACGAATTATCTTTTATGTGATGAAGATATTGGGGGCAGAAAATCTGCCAAAGCAAAAGAGCTGGGTACTACCTTCCTTGCTGAAGATGGATTGTTCGATATGATACGGGCATCAAAGCCATTAAAGGTTTCTGTAAAACAAGAACCAAAGAAAACAGAGGATAAGGCTTCTGCATCTCTTTCGAAGGGTAGCCCTCAGAAAGTACCAGCAAAGAAAGCTCTTTCTGGTAATTCTTCTGCAGCACATGTATCAAACAAGTCTTCAGCCTCAGATTCTCCTCTTTCTAAGTCTAAGGCTCAAAATGTAAAAGATTCCTCATTGATATGGACAGAGAAGTATAGACCAAAGGTTCCAAATGACATGGTTGGAAACCAAGCATTGGTCAAGCAACTTCATGATTGGTTGGCACATTGGCATGAGCAGTTTCTTGATGGTGCAAATGCAAAAAAAGGTAAAAAGCAAGGTGATTCTGGTTCCAAAAAGGCAGTACTATTAAGTGGAACTCCTGGTATTGGGAAAACTACTTCAGCAAAATTGGTCAGTCAAATGCTAGGGTTTCAGGCAATTGAGGTAAATGCTAGTGATAACCGTGGAAAGGCTGATTCCAAAATTGAGAAAGGAATTTCTGGAAGCAATGCAAATTCTATTAAGGAACTTGTTAGCAACGAGGCCCTTAGTGCCAACATGGATAGGTCAAAACATCCCAAAACTGTGCTTATTATGGATGAGGTTGATGGCATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTCATTGCCAGTATCAAGACATCAAAAATACCTATCATTTGCATTTGCAATGACCGTTACAGTCAGAAACTGAAAAGTCTTGTCAACTATTGTCTGCTAATTACCTTTCGGAAACCTACAAAACAACAGATGGCAAAAAGATTAATGCAGGTTTCAAAGTGTGAGGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTAAATGGAGATATGCGTATGGCTCTCAACCACTTGCAGTATATGAGCCTCTCAATGTCAGTCATCAAATATGATGACATCAGGCACCGTCTCCTTGCCAGTTCAAAAGATGAAGACATTTCACCATTTACGGCTGTTGACAAGCTTTTTGGTTTTAATGCTGGAAGGTTAAAAATGGATGAGCGTATTGACCTTGGCATGAGTGACCTCGACCTCGTTCCTCTTCTTATCCAGGAAAACTATATTAATTACAGACCCAGCTCAACTGGTAAAGAAGACAGTGAACTTAAACGGATGAAGTTGATTGCCCAAGCTGCTGAGTCTATTGCCGATGGAGATATAGTAAATGTACAGATTAGGAGATATCGGCAGTGGCAGCTCTCTCAAACTAGTTGTGTTGCTTCCTCTATCACTCCTGCATCATTATTACATGGACAAAGGGAGATACTTGAACAGGGAGAACGGAACTACAATAGATTTGGTGGGTGGCTTGGAAAGAACTCGACAATGGGAAAAAATATAAGGCTTTTGGAAGATTTGCATGTCCACGTTCTTGCTTCTCGTGAATCTAGTTCAGGCAGGGAAACTCTCCGTTTGGAATACCTGACACTTCTACTTAAGCGATTAACTGAGCCACTCCGTACCTTGCCTAAGGATGAAGCTGTTGAGAAAGTTGTGGATTTTATGAATGAATACTCTATCAGTCAGGAGGACTTTGATACGGTAGTTGAATTGTCAAAATTTAAGGGCCATCCAAATCCACTGGATGGGGTACAGCCAGCTGTGAAAGCAGCTTTAACAAAAGCATACAAAGAAAAAAACAAAATGAGAATGGTGAAAGCTGCAGATCTGGTCACACTCCCTGGAGTCAAAAAGGCTCCTAAGAAAAGGATTGCTGCAATCTTGGAACCTCCACCTGAAGAAGTGGGAGAGGTTGGTGGTGAACCATTGACAGAAAGCGAAGAGGAGTCTTCAGATACAGAGGAATCTGACGGCACCACAAATGGCGAGAAGCTGCAGCAGGAACTTCAGAGCTTAAATTCCGAAGCAACACAAGTGCAGTTGGATTTGAAAGGAAGCAGAGCTGGAACTTCAAGTGGCAAGAACACATCGCGTGGTACTAGTAGAGGTAGGGGTCGAGGTAGAGGTGGTTCTACTGCCGCAAAGAAGGAAAGTGAGCCTGGTTCAGGTTCTGGTGCTAAAAGAAAGAGGTGA 2925 0.4277 MPDIRKWFMKSHDKGNANASNSNTTNQPKPYVPPANSQPQKAARGCQESSGRRKTSKYFSADKQKPKEETEELPNKRKQKDNDELVKPPPLKKIHKVQDDDDGDDDFVMPRAAAKNSVVTTPSKKLKSGSGKGVPQKSANVEEGEEDDEKDDASPLKSTGRGRGGRVSSAAPAGGRGRGGFMNFGERKEPPNKGQKEIPQGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSAKAKELGTTFLAEDGLFDMIRASKPLKVSVKQEPKKTEDKASASLSKGSPQKVPAKKALSGNSSAAHVSNKSSASDSPLSKSKAQNVKDSSLIWTEKYRPKVPNDMVGNQALVKQLHDWLAHWHEQFLDGANAKKGKKQGDSGSKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKADSKIEKGISGSNANSIKELVSNEALSANMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKTSKIPIICICNDRYSQKLKSLVNYCLLITFRKPTKQQMAKRLMQVSKCEGLQVNEIALEELAERVNGDMRMALNHLQYMSLSMSVIKYDDIRHRLLASSKDEDISPFTAVDKLFGFNAGRLKMDERIDLGMSDLDLVPLLIQENYINYRPSSTGKEDSELKRMKLIAQAAESIADGDIVNVQIRRYRQWQLSQTSCVASSITPASLLHGQREILEQGERNYNRFGGWLGKNSTMGKNIRLLEDLHVHVLASRESSSGRETLRLEYLTLLLKRLTEPLRTLPKDEAVEKVVDFMNEYSISQEDFDTVVELSKFKGHPNPLDGVQPAVKAALTKAYKEKNKMRMVKAADLVTLPGVKKAPKKRIAAILEPPPEEVGEVGGEPLTESEEESSDTEESDGTTNGEKLQQELQSLNSEATQVQLDLKGSRAGTSSGKNTSRGTSRGRGRGRGGSTAAKKESEPGSGSGAKRKR* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01555 974 Gene3D - 611 720 - -
Pte1g01555 974 Pfam BRCA1 C Terminus (BRCT) domain 203 278 IPR001357 -
Pte1g01555 974 MobiDBLite consensus disorder prediction 286 300 - -
Pte1g01555 974 MobiDBLite consensus disorder prediction 904 946 - -
Pte1g01555 974 MobiDBLite consensus disorder prediction 314 344 - -
Pte1g01555 974 CDD BRCT_RFC1 201 279 - -
Pte1g01555 974 SMART AAA_5 402 540 IPR003593 GO:0016887
Pte1g01555 974 MobiDBLite consensus disorder prediction 1 201 - -
Pte1g01555 974 SMART BRCT_7 203 281 IPR001357 -
Pte1g01555 974 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 20 951 - -
Pte1g01555 974 Gene3D - 539 609 - -
Pte1g01555 974 FunFam Replication factor C subunit 1 350 538 - -
Pte1g01555 974 SUPERFAMILY BRCT domain 202 286 IPR036420 -
Pte1g01555 974 MobiDBLite consensus disorder prediction 285 344 - -
Pte1g01555 974 MobiDBLite consensus disorder prediction 47 102 - -
Pte1g01555 974 SUPERFAMILY post-AAA+ oligomerization domain-like 610 755 IPR008921 GO:0003677|GO:0006260
Pte1g01555 974 MobiDBLite consensus disorder prediction 870 974 - -
Pte1g01555 974 MobiDBLite consensus disorder prediction 14 31 - -
Pte1g01555 974 Pfam ATPase family associated with various cellular activities (AAA) 406 518 IPR003959 GO:0005524|GO:0016887
Pte1g01555 974 Coils Coil 906 926 - -
Pte1g01555 974 PIRSF RFC1 169 941 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Pte1g01555 974 PIRSF RFC1 1 176 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Pte1g01555 974 FunFam Replication factor C subunit 1 611 720 - -
Pte1g01555 974 Gene3D BRCT domain 178 280 IPR036420 -
Pte1g01555 974 CDD HLD_clamp_RFC 539 597 - -
Pte1g01555 974 FunFam Replication factor C subunit 1 176 280 - -
Pte1g01555 974 MobiDBLite consensus disorder prediction 884 900 - -
Pte1g01555 974 Gene3D - 350 538 IPR027417 -
Pte1g01555 974 CDD AAA 399 539 - -
Pte1g01555 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 599 IPR027417 -
Pte1g01555 974 ProSiteProfiles BRCT domain profile. 201 284 IPR001357 -
Pte1g01555 974 FunFam Replication factor C subunit 1 539 610 - -
Pte1g01555 974 Pfam Replication factor RFC1 C terminal domain 679 841 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01555 Pte-Chr1 37211452 37220144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01555 1 921 Core DNA Replication Machinery Family AT5G22010 68.455 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01555 K10754 - cave:132163425 1289.63