Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01554 ATGTCAATGGAAATGATGGCATCTGAACGTGTATGTTACGTCCACTGCAACTTCTGCAACACCATTTTAGCGGTTAGTGTGCCATGCAGCAGCTTATTCAACATAGTGACAGTTCGGTGCGGGCATTGTGCGAATTTGCTGTCAGTAAACATGGGAGCATCCATTCAAACATATCCTCCTCAAGATCCCCAGAAACAGCAACAACAGGTCTCAAACGAAGATTCAAGCAACAAGCTGGACTTTGCATCATCTTCAACATGCAACAAAATTACACAATTTGAGCCTGTAGATCAACATGGAGAAACTAGATTGCCTCCTAATCGTCCTCCTGAAAAGAGACAACGTGTTCCATCTGCATATAACCGTTTCATAAAGGAGGAAATTCAAAGAATTAAGGCTAGCAATCCAGATATCAGCCACAGAGAGGCCTTCAGCACAGCCGCCAAAAACTGGGCACATTTTCCTCACATTCACTTTGGACTAAAACTGAACGGAAACAAGCAACCGAAGCTTGACCAGACTCTCCCAGGAGAAGGGTCAGCAAACTCTAATGGTTTCTACTGA 564 0.4397 MSMEMMASERVCYVHCNFCNTILAVSVPCSSLFNIVTVRCGHCANLLSVNMGASIQTYPPQDPQKQQQQVSNEDSSNKLDFASSSTCNKITQFEPVDQHGETRLPPNRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLNGNKQPKLDQTLPGEGSANSNGFY* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01554 187 CDD HMG-box_SF 115 151 - -
Pte1g01554 187 MobiDBLite consensus disorder prediction 168 187 - -
Pte1g01554 187 MobiDBLite consensus disorder prediction 57 78 - -
Pte1g01554 187 Gene3D High mobility group box domain 101 156 IPR036910 -
Pte1g01554 187 Pfam YABBY protein 7 161 IPR006780 GO:0007275
Pte1g01554 187 MobiDBLite consensus disorder prediction 92 117 - -
Pte1g01554 187 PANTHER PROTEIN YABBY 6-RELATED 1 170 IPR006780 GO:0007275
Pte1g01554 187 FunFam Axial regulator YABBY 106 175 - -
Pte1g01554 187 SUPERFAMILY HMG-box 106 154 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01554 Pte-Chr1 37200377 37205893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01554 1 188 C2C2-YABBY Transcription Factor Family AT1G08465 63.918 4.03e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pte1g01554 YABBY 6.7e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01554 K25796 - pvy:116122494 291.582