Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01541 ATGGAGCCTGAGATCGATATTCCCCAGTATTTCATTTGCCCCATTTCTCTTCAGATCATGAAGGATCCCGTTACAACAGTGTCGGGTATAACATACGATAGAGAAAGCATAGAGCAGTGGTTTGCTTCAACCGAAAAATCAGTCTGCCCTGTCACAAAGCAGTCTTTGTTGGAAGACTCATCGGTGACACCAAACCATACTCTACGCCGGCTCATTCAGGCATGGTGCGCAGCCAATGGAACCAACGGAGTTGATAGAATCCTTACCCCTAGATCCCCTCTCAAGGAGAGCCATGTCCTTAATCTTGTCAGGGATATGAGGGCGCCTGATCTTTGTCAAACCGCATTGGAGAAAATGGAAACCATTGCCACTGAGGATGAGAAGAACAGAAAGCTTATGGCTGAAGCTGGTGTCGCCAAGGCTATGGTATCGTTTATCTTGAATAGTTTCAAAGAAGGTACAACAACGGGCCTCCAAGAAGCTTTAACAATTCTGCATTCAATTTGGAGTGTTCCATTAATGGAGACAGATATTAAGCTCATTGCAAGCCAAAACTTGGAGTTGATCGATTCATTGAACTGGGTTTTGCAACTTGATTACAGCTTGGATAATAAGGTGAAAGTTGTGAATGAAGCTTTGCCAGTTTTGAAGAAGGTGACTGAAGCTACAAGTTCAAAGTTCTTAGGGTGTTTAAGACATGAATTTTTCAAGGAAATGGTGGTAGTGTTGAAGAACAAAGCAGTGTTCTCACAACAAGCTATCAAATCAGCCTTACATGTCTTGACTGAAACATGTTCTTTAAGTTCAAACCGTACTAAGATCGTGGACGCTGGTGCAATCTTCGAACTCATTGAGCTCGAACTTGAGAAGCATGAGAAGAACATAACAGAACTCATCTTCAACCTTCTGGCAAATCTATGCTCTTCTGCTGATGGAAGAGAACAGCTTCTACAGCATGCAGGAAGCATCGCCGTAATTTCTAAAAGGATTTTGAGAGTTTCTGCTGCTACAGACGACCAAGCTGTTCATATACTTTGGCTGGTAGCATCATTTTCAGCGACAAACGACGTCGTTGTAGAGATGTTAAAAATTGGAGCAGTGACAAAGCTTTGTATGGTGATGCAAGCCAATTGTCCCGCATCTCTCAAAGACAAAAGCAGAAGCATACTTAAGGCAAACTCCAAAGCTTGGAACAATTCACCTTGCACTGCTGTATATTAA 1221 0.4267 MEPEIDIPQYFICPISLQIMKDPVTTVSGITYDRESIEQWFASTEKSVCPVTKQSLLEDSSVTPNHTLRRLIQAWCAANGTNGVDRILTPRSPLKESHVLNLVRDMRAPDLCQTALEKMETIATEDEKNRKLMAEAGVAKAMVSFILNSFKEGTTTGLQEALTILHSIWSVPLMETDIKLIASQNLELIDSLNWVLQLDYSLDNKVKVVNEALPVLKKVTEATSSKFLGCLRHEFFKEMVVVLKNKAVFSQQAIKSALHVLTETCSLSSNRTKIVDAGAIFELIELELEKHEKNITELIFNLLANLCSSADGREQLLQHAGSIAVISKRILRVSAATDDQAVHILWLVASFSATNDVVVEMLKIGAVTKLCMVMQANCPASLKDKSRSILKANSKAWNNSPCTAVY* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01541 406 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Pte1g01541 406 SUPERFAMILY ARM repeat 109 390 IPR016024 -
Pte1g01541 406 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Pte1g01541 406 PANTHER WDSAM1 PROTEIN 4 403 IPR045185 GO:0061630
Pte1g01541 406 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pte1g01541 406 SUPERFAMILY RING/U-box 4 83 - -
Pte1g01541 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 82 IPR013083 -
Pte1g01541 406 Gene3D - 95 397 IPR011989 -
Pte1g01541 406 CDD RING-Ubox_PUB 8 56 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01541 Pte-Chr1 37021313 37022763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01541 2 405 U-box Gene Family AT3G11840 41.295 1.08e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01541 - - qsa:O6P43_028593 493.426