Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01525 ATGAAGGACCCCGTCACAGCGGTGTCCGGCATAACCTACGATAGAGAGAGCATAGAGCAGTGGTTTTCTGCAACCAGAAAAATAGTATGCCCAGTCACAAAGCAGCCTTTGTCAAAAGACTCACCCTTGACACCAAACCATATACTACGCCGGTTCATTCAGGCATGGTGTGTAACCAATGCAACCAACGGAGTTGATAGAATCCCTACCCCCAGATCCCCTCTCAACAAGAGTCATGTCCATAATCTTGTCAAGGATATGAAGGTGCCTCATCTTTGTCAGACCGCATTGGAGAAAATGGAAACCATGGCCACAGAAAGTGAGAGGAATAGAAGACTTATGGCTGAAGCTGGTGTCGCTAAGGCTATGGTATTGTTTGTGTTGAAGACTTTCAAGGAAGGTACCACAACTGGTCTCCAAGAAGCTCTAACAATTCTGCATTCAATTTGGAGTCTTCCATCAATGGAGACAGAAATTAAGGTCTTTGCAAGTCAAAGCTTGGAGTTGATCGATTCTTTGACCTGGGTTTTGCAACTTGATTACAGCTTGGATGATAAGGTGAAAGTTGTGAATGAAGCTTTGCCAGTTTTGAAGAAGATGGTTGAAGCTACAAGTTCAAAGTTATTAGGGTGTCTAAAACATGAATTTTTCAAGGAAATGGTAACGGTGTTGAAGAACAAAGCTGTATTCTCTCAACAAACCATCAAGTCAGCGTTGCATGTCTTGACTGAAACATGTTCGTTAGGTTCAAACCGCAGTAAAATTCTGAAGGTTGGTGCAGTCTTTGAACTCATTGAACTCGAACTTGAGAAGCCTGAAAGGAACATCACAGAACTCATCTTCAACCTGCTGGCAAATCTATGCTCCTGTGCTGATGGAAGAGAACAACTTCTAAGGCATGCAGGAAGCATCGCCGTAATTTCTAAAAGGATTTTGAGAGTTTCTGCTGCTACAGACGATCAAGCTATTCACATACTCTGGCTGGTAACAACATTTTCAGCGACAAACAACGTGGTTGTAGAGATGTTAAAACTTGGAGCAGTGACAAAGCTTTGTATGGTGATGCAAGCCAATTGTCCTGCATATCTCAAAGACAAAACCAGAAAGATCCTTAGGTTACACTCCCAAGCTTGGAACAATTCACCTTGCACTGCTGTATATTAA 1164 0.4261 MKDPVTAVSGITYDRESIEQWFSATRKIVCPVTKQPLSKDSPLTPNHILRRFIQAWCVTNATNGVDRIPTPRSPLNKSHVHNLVKDMKVPHLCQTALEKMETMATESERNRRLMAEAGVAKAMVLFVLKTFKEGTTTGLQEALTILHSIWSLPSMETEIKVFASQSLELIDSLTWVLQLDYSLDDKVKVVNEALPVLKKMVEATSSKLLGCLKHEFFKEMVTVLKNKAVFSQQTIKSALHVLTETCSLGSNRSKILKVGAVFELIELELEKPERNITELIFNLLANLCSCADGREQLLRHAGSIAVISKRILRVSAATDDQAIHILWLVTTFSATNNVVVEMLKLGAVTKLCMVMQANCPAYLKDKTRKILRLHSQAWNNSPCTAVY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01525 387 Gene3D - 56 379 IPR011989 -
Pte1g01525 387 SUPERFAMILY ARM repeat 90 364 IPR016024 -
Pte1g01525 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 55 IPR013083 -
Pte1g01525 387 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Pte1g01525 387 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Pte1g01525 387 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Pte1g01525 387 SUPERFAMILY RING/U-box 1 64 - -
Pte1g01525 387 PANTHER WDSAM1 PROTEIN 1 384 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01525 Pte-Chr1 36671663 36672882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01525 1 386 U-box Gene Family AT3G11840 40.835 1.90e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01525 - - qsa:O6P43_028593 494.967