LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01520	ATGGAATCTAGAATGGATCATTATGAGATCATGGAGCAGATCGGTCGAGGAGCTTTCGGAGCAGCCATTCTTGTACTTCACAAGTCTGAGAGGAAAAAATATGTCTTAAAAAAAATCAGGCTTGCAAGGCAGACTGAACGGTGCCGGAGATCTGCTCATCAAGAGATGGCTCTAATTGCCCGTATTCAACATCCTCACATCGTTGAATTTAAGGAAGCTTGGGTGGAGAAGGGCTGCTATGTCTGCATTGTCACTGGATACTGCGAAGGAGGAGACATGGCCGAGTTGATGAAAAAACAAAATGGAGCTTACTTTCCAGAGGAGAAACTCTGCAAGTGGTTCACACAACTACTGCTGGCAGTTGAATATCTGCATTCAAATTTTGTTTTGCACCGGGACCTGAAGTGCTCCAATATTTTTCTTACTAAGGATCATGATATTCGCCTTGGTGATTTTGGGCTTGCTAAAACACTGAAAGCAGATGATTTAGCTTCTTCGGTTGTGGGAACACCTAATTATATGTGTCCTGAGCTCCTAGCGGATATTCCTTATGGATTCAAATCTGATATTTGGTCCCTTGGTATATTCATCTATACAGCGAATTGTCATTATATGTATAAATATAATTTTCTGTGGCTTAACATACTCTTCCCATGTTTAGGGTGCTGCATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTACCTTCCTGTTACTCACCGTCCTTGAAAACACTCATAAAGGGCATGCTGAGAAAAAGTCCTGAGCATCGGCCACCGGCATCTGAGATCTTAAAACATCCCTATTTGCAACCTTATGTTGATCAATATCGTCCATCTTTCAGTCCTCCAACAACCATTTCCCCTGAGAAGCCTCTTCCTGGTGATCACGATTCTAGAAGAAGTATGGCTGAAAGCCAAAATAGTAACAGCTCTTGTAGTGATAAAGATAGCTCACTTTCAAGTGAGAAGAACGTTTCTGCATCAGGTCCAAACAGTGACAATAAAGTCATTGAAATTGATATAACATCTCACGATGATGAAGAAGGTCTGGAGCATTTTCTTCCTGGTGAAGAAGAAATGAATCAGCATGAGTTAACAAAGCCATCTCATGGCAGAGTGAAACCTGATAATAAATCTAGGCCACCGAAAACAATTAAACATATTATGATGGCACTCAAAGAAGGTAAAATTAGGGAGAACAGTTCCCCTTTGAAAATTAATCGCACAAAGGCTGGTGGTTCATCAACACATAGAGCAAGCACTGAGGCACAGGTTAAATTGCCAAAACCTAACACTTCAACTCCTAATGTTAAGCTTGCTGTGGAGTCACCAACTGCTCCCCCAACAAAGGCAATGCCTGACTCTTCCACAAGAGTTCACGGATCTCATTCTATAAAACATCAGTTACCATTGGTAGAATCTAACCCAAATACTAAAGCAAGACATGACGTGACTCCTCCAATGGAACCTATGAAGCAGGTTACTGAAGATGGGGTTCATGCTAAGCCTAGGTTAAGGACCCCTCCTGCACTGGTTAGACGCCCTTCATTTCCCCCAAGGGTAAAGCAGGGCGGCTCTAATGCATTAAATGGAACGAGTGATGCTTTGAAGCAAGGTAATGCCGATGAATTACTACAAGAGCACCAGAATAAGACAGTGATTGAATTTCCAAATGGTTACATTCTTGCTTCTAGGGTTGTTCCCCATACACCTGAGAAAGAATCTGAAAGAGCTTGCAAAGGAATGCAGACAGATAGCAGTAACTCTGTCTCGTCATCTGTGTCTGTTCAAGGATTTGAGGTCTGTGACGATGTGACTACTCCTATGGACATGAAAGAACATATGCTTTGCAGTCAAGAAATTGGGTCTGTTGTGGAAAATTTTGAACCTTTTTGCTCACATGTTATCTCTCTCAGTAACTCCACTCATTCGGAAATGGCTGAAAATATGTTTGGAGGATCCTTTCAACCCATTGTGGGACATCAGAATATGAGTACCAGTGATGAGAAAGTAAGATCAAATCTCCCAAATTCTAAGGAAAGGGTTCTATCTAATTATAATACACCCTCAGATTGGACCAATTGTTCTGCCAACCATGGAAGTGATCATAGGTCTATAAGTTCTTCAAGTGAAACCTCTGCTGTGGATGATCAGAACACGGCTCTCATCAACGATAAGCCATTGACCATGCCTAGAGCTATTCCATGTTCTGGAGAAAATTTGGTCCGCGAACAAGTTCCTTCGTTGACCAAACCCAATGGCAAACCTGATATAGCAACCAATCCACATATTTCTTGTTCCTCAGGTTGTTACGACAAGGTTACTGCAGCAGAAAGTTCCGCAGCCACTACTTCTGATTTACTAACCCAGATAAATACTCTTCCAAACAATGAACTTGTTTCGCAGAATCCAACAAGTGAAAGGCAAATAGCTGGTCATTATCCTCCAGCCTTTGACGATGTCATCCATGTCATCAGGCACAGTAGTTTCCGTGTTGGGAGTGAACAGCCTGTAGTAGACTCAGCTGAGATGGGAGTTCCAAATGTGGATGTTGGAAAACTAATAAATGTTGTTAGCAATGAACTAGAGATGAGAAACGTGACCTCTCCCGTGAGCCACAACACCTCAAGTTGCTCAGCAAGTTTGAGTATGAAGTCTAATGTTACTGATCACTGCGACGTGAGGGAACTTGATATTAGAAACACTGCTTCTTATTCTAAACCTTGTTCCCCCGAGGTGAGCCAATCCACTTCTACTGTGACTGAAGAAGCAACACCTGCAAAAGAAATTTTGGATGTTAAATCATTCAGGCAGAGGGCAGAGGCGCTGGAGGGGCTTTTAGAATTGTCAGCGGAGTTGCTGCAGCACAATAGATTGGAGGAACTTGCAGTCGTTCTGAAGCCTTTTGGAAAAGATAAGGTATCCCCTAGAGAAACAGCGATTTGGTTAGCCAAGAGTCTCAAAGGCATGATGATTGAAGACAGTGGACGCTGTTCATGA	3060	0.4245	MESRMDHYEIMEQIGRGAFGAAILVLHKSERKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPHIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKQNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDHDIRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGIFIYTANCHYMYKYNFLWLNILFPCLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPSCYSPSLKTLIKGMLRKSPEHRPPASEILKHPYLQPYVDQYRPSFSPPTTISPEKPLPGDHDSRRSMAESQNSNSSCSDKDSSLSSEKNVSASGPNSDNKVIEIDITSHDDEEGLEHFLPGEEEMNQHELTKPSHGRVKPDNKSRPPKTIKHIMMALKEGKIRENSSPLKINRTKAGGSSTHRASTEAQVKLPKPNTSTPNVKLAVESPTAPPTKAMPDSSTRVHGSHSIKHQLPLVESNPNTKARHDVTPPMEPMKQVTEDGVHAKPRLRTPPALVRRPSFPPRVKQGGSNALNGTSDALKQGNADELLQEHQNKTVIEFPNGYILASRVVPHTPEKESERACKGMQTDSSNSVSSSVSVQGFEVCDDVTTPMDMKEHMLCSQEIGSVVENFEPFCSHVISLSNSTHSEMAENMFGGSFQPIVGHQNMSTSDEKVRSNLPNSKERVLSNYNTPSDWTNCSANHGSDHRSISSSSETSAVDDQNTALINDKPLTMPRAIPCSGENLVREQVPSLTKPNGKPDIATNPHISCSSGCYDKVTAAESSAATTSDLLTQINTLPNNELVSQNPTSERQIAGHYPPAFDDVIHVIRHSSFRVGSEQPVVDSAEMGVPNVDVGKLINVVSNELEMRNVTSPVSHNTSSCSASLSMKSNVTDHCDVRELDIRNTASYSKPCSPEVSQSTSTVTEEATPAKEILDVKSFRQRAEALEGLLELSAELLQHNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGMMIEDSGRCS*	1020

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	425	481	-	-
	Pte1g01520	1019	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	323	356	-	-
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	592	612	-	-
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	383	402	-	-
	Pte1g01520	1019	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	5	968	-	-
	Pte1g01520	1019	SMART	serkin_6	8	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g01520	1019	Pfam	Protein kinase domain	8	202	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g01520	1019	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	299	356	-	-
	Pte1g01520	1019	Gene3D	Phosphorylase Kinase; domain 1	1	87	-	-
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	717	736	-	-
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	496	555	-	-
	Pte1g01520	1019	ProSiteProfiles	Protein kinase domain profile.	8	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g01520	1019	FunFam	Serine/threonine-protein kinase Nek2	5	87	-	-
	Pte1g01520	1019	MobiDBLite	consensus disorder prediction	425	460	-	-
	Pte1g01520	1019	SUPERFAMILY	Protein kinase-like (PK-like)	4	294	IPR011009	-
	Pte1g01520	1019	CDD	STKc_Nek	7	289	-	-
	Pte1g01520	1019	Gene3D	Transferase(Phosphotransferase) domain 1	90	359	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01520	Pte-Chr1	36601302	36607102	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01520	14	290	MAP Kinase Kinase Kinase	AT1G53570	28.369	3.30e-31	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Pte1g01520		Pkinase	4.1e-54	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01520	K08857		-	zju:107410239	1061.98