LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01467	ATGGCTGCAGCTAAGAATAGTGGTAAATCTAAGAAGGGTGTCGATGAACACAATATGACTCACATAGGAGCAAGCCGTGACTGGGAAATTGACGAAGGCAAGGACTTTGATCTTGGTTTTGAGAGGCAATCACAGCCATGGAAGACAGTTTTTAGTGAAGTTTCCATGTCGAACAGGCCTCTTAAGAAGATACGTAGTCCTGAGCGTCCATACCCACCTCAGTTTTCTGATTCATCGCCTCAACAATCAGTTTCCTCCTCTGCTACTGGTCCTACTTTATCTTCTTCTCTATCATTTTCTCCTCAAACCTCCTCTAGAATGGTGTTCCCTTTTGCTGTTGACGGGTCTCAACAGCCTATGCAATTTTCACAGCAGTTCTTAAACTCAAATTTCCATTTGTTCCGTCCACCGGTTCAGCCGCCCGAGCAGAATCAACAACAAATGATATCTTTCAGCCCCTCTCAACCGAAATTTGGTTACTACCCATTATCTGCTCGAGATTATGCCGCTTTACAACAGCAACAGCAGCTTCAATATTGGAGTGACGCTTTGAATCTTAGCCCAAGAGGAAGAATGATGATGATGATGAACAGGTTAGGACCTGACGGAAAACCATTGTACAGGCCATCTGTGCAGCCTATAAACACAACTAAGCTTTACAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTTGCTGAGATTCGTCTTCCTCGCAACAGGACTCGCCTCTGGCTAGGCACATTTGACACTGCAGAAGATGCTGCCTTGGCATATGACAAAGAGGCCTTCAAGTTGAGAGGTGAGAATGCTAAGCTCAATTTTCCAGAGCTCTTTCTCAATAAGGATACAGCACCCACCACTGCTCCAACTTCAACCGCCTCATCTCCCCCAACTCCACGTGAAACCTCAACCTCAAGACAGTCTGTTGCAGAGCTGACTCAACATGTTTCAGAGTGCTGTGAGATGCCGCCGCCGCCAGTACCAGCACCACAGCCAGATGAAACTAACAATGATTCAGGAATTGGTTCTAGTGATGCCACGGTCAGCGACGAAGTTCAGGCTTCTGCAGCTTACAGTGAGCAGTCAGCCGAAGGTGTCTGTCAGGAATCCGTTTGGGGTGAAATGGCCGAGGCTTGGTTCAATGCTATTCCTGCCGGTTGGGGTCCAGGTAGCCCTGTGTGGGATGATATTGACACCAACGCCACTAATAATCTCTTATTGCCATCACAGCTTTCTTTCATGAACCCAACTCATCATCAATTCAATGAGCCTGATACATACAGACTGGACGATAACACAGCAGCTGAAGGTCCTTCATCTCCTTCATGTCCAATGAGGCCCTTCTTTTCCAAGGGCTAA	1362	0.4728	MAAAKNSGKSKKGVDEHNMTHIGASRDWEIDEGKDFDLGFERQSQPWKTVFSEVSMSNRPLKKIRSPERPYPPQFSDSSPQQSVSSSATGPTLSSSLSFSPQTSSRMVFPFAVDGSQQPMQFSQQFLNSNFHLFRPPVQPPEQNQQQMISFSPSQPKFGYYPLSARDYAALQQQQQLQYWSDALNLSPRGRMMMMMNRLGPDGKPLYRPSVQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDKEAFKLRGENAKLNFPELFLNKDTAPTTAPTSTASSPPTPRETSTSRQSVAELTQHVSECCEMPPPPVPAPQPDETNNDSGIGSSDATVSDEVQASAAYSEQSAEGVCQESVWGEMAEAWFNAIPAGWGPGSPVWDDIDTNATNNLLLPSQLSFMNPTHHQFNEPDTYRLDDNTAAEGPSSPSCPMRPFFSKG*	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01467	453	CDD	AP2	218	278	IPR001471	GO:0003700\|GO:0006355
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	9	28	-	-
	Pte1g01467	453	SUPERFAMILY	DNA-binding domain	219	277	IPR016177	GO:0003677
	Pte1g01467	453	Gene3D	AP2/ERF domain	219	277	IPR036955	GO:0003700\|GO:0006355
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	282	363	-	-
	Pte1g01467	453	PRINTS	Ethylene responsive element binding protein signature	242	258	IPR001471	GO:0003700\|GO:0006355
	Pte1g01467	453	PRINTS	Ethylene responsive element binding protein signature	220	231	IPR001471	GO:0003700\|GO:0006355
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	284	315	-	-
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	75	101	-	-
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	49	101	-	-
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	417	453	-	-
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	334	363	-	-
	Pte1g01467	453	ProSiteProfiles	AP2/ERF domain profile.	219	276	IPR001471	GO:0003700\|GO:0006355
	Pte1g01467	453	FunFam	Ethylene-responsive transcription factor 2	218	277	-	-
	Pte1g01467	453	SMART	rav1_2	219	282	IPR001471	GO:0003700\|GO:0006355
	Pte1g01467	453	MobiDBLite	consensus disorder prediction	1	28	-	-
	Pte1g01467	453	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	21	398	-	-
	Pte1g01467	453	Pfam	AP2 domain	220	268	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01467	Pte-Chr1	36170220	36171581	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01467	1	405	AP2-EREBP Transcription Factor Family	AT2G20880	40.385	7.73e-66	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pte1g01467		AP2	5.8e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01467	-		-	qsa:O6P43_028790	468.388