Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01464 ATGCAGCTGCTTGACCGACATGTCAGCTCTGGTTCGTTCTGGAGCTTTTGTACGAGCTTGGCATGGAGTTTCATGATCGTGTATGGTCAAGGACAGCAGCTGCATCCTGTTTCTGACCCACATTGGCAACCGGGCACCGCTACTTGGTATGGCAACCCTGAAGGGGATGGTAGCAATGGTGGGGCATGTGGGTATGGATCATTGGTTGACGTGAAGCCACTGAAGGCTCGAGTGGGTGCAGTTGGGCCTGTTCTGTTCAAGAAGGGGGAAGGATGTGGGGAATGCTACAAGGTGAAGTGCTTGGACGAGAGGATATGCTCAAGGAGAGCCGTGACTGTTATCATTACGGACGAATGTCCTGGCTGTCCTTCAGATAGAACCCACTTCGACCTTAGTGGTGCTGCATTTGGCCACATGGCTGTTGCCGGCGAGGGAGGGCAGCTCAGAGACAGAGGAGAAATCCCCGTCATTTACCGGAGGACGCCTTGCAAGTATCCTGGGAGAAACGTTGCATTCCATGTCAACGAAGGTTCAACAGAATTCTGGCTCTCTCTTTTGGTTGAGTTTGAGGATGACGATGGAGATATAGGGTCAATGCATATTCAAGAGGCAGGTTCTGGTGAGTGGCTAGCAATGAATCATTTATGGGGTGCCAATTGGTGCATCATCGGTGGACCTCTGAGGGGACCCTTTTCAGTGAAGTTAATAACACTATCAACAGGAAAATCTCTGTCTGCCAGAGATGTCATCCCCAGCAATTGGGTTCCAAAAGCCACTTACACCTCGCGACTCAATTTCTTCCCTTAG 807 0.5081 MQLLDRHVSSGSFWSFCTSLAWSFMIVYGQGQQLHPVSDPHWQPGTATWYGNPEGDGSNGGACGYGSLVDVKPLKARVGAVGPVLFKKGEGCGECYKVKCLDERICSRRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVAGEGGQLRDRGEIPVIYRRTPCKYPGRNVAFHVNEGSTEFWLSLLVEFEDDDGDIGSMHIQEAGSGEWLAMNHLWGANWCIIGGPLRGPFSVKLITLSTGKSLSARDVIPSNWVPKATYTSRLNFFP* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01464 268 PANTHER EXPANSIN-B3 26 266 - -
Pte1g01464 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 262 IPR007117 -
Pte1g01464 268 Gene3D - 164 263 IPR036749 -
Pte1g01464 268 SMART dpbb_1 78 158 IPR007112 -
Pte1g01464 268 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Pte1g01464 268 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Pte1g01464 268 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Pte1g01464 268 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Pte1g01464 268 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Pte1g01464 268 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Pte1g01464 268 Pfam Expansin C-terminal domain 170 251 IPR007117 -
Pte1g01464 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Pte1g01464 268 SUPERFAMILY PHL pollen allergen 168 262 IPR036749 -
Pte1g01464 268 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Pte1g01464 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pte1g01464 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Pte1g01464 268 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Pte1g01464 268 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Pte1g01464 268 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Pte1g01464 268 SUPERFAMILY Barwin-like endoglucanases 36 167 IPR036908 -
Pte1g01464 268 FunFam Beta-expansin 3 165 267 - -
Pte1g01464 268 Gene3D - 29 163 IPR036908 -
Pte1g01464 268 CDD DPBB_EXPB_N 42 163 - -
Pte1g01464 268 FunFam Expansin B3 28 164 - -
Pte1g01464 268 Pfam Lytic transglycolase 83 156 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01464 Pte-Chr1 36157807 36160420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01464 37 203 Expansin Gene Family AT4G28250 74.850 1.36e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01464 K20628 - qsa:O6P43_028797 468.388