Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01461 ATGGCCTTAGATCAGTACTTTGACGAGACAATATCCCAGATCGACTCTTTTACAGCGGGTAAATCCTCTTTGGGAAAATGGAATGCTATCTCAGAGACTGACGCCAATGGACCTGGCGGCTTTGATTGCAATATCTGCCTGGACTCAGTGCAAGACCCTGTGGTCACTTTGTGTGGCCATCTCTACTGCTGGCCATGCATCTATAAGTGGCTCGACCATTTTCACAGTACTCCTGGTGAAGACCTAGAGCTGCAATCACCGCAGTGTCCTGTATGCAAAGCGGAGATTTCTCAGGCTTCTCTGGTGCCACTCTATGGCCGTGGTCAAACGACAAATACTTCTAAAGGAAAGGGCCACCAGATCCCAAGAAGACCTCAAGGTCCCGCATTTGGATTCAACACACAGATATCAACTGGTCATAGTTCAATTCATCCGCCAGCTTCACAATTTCTAGACCATCCTAGCCCATACCAAGCTCAACCGTTCAACTCAGTTCCGAGCAATTACAATACTCATTTCGCCAGACCAGGTGTGTCCATGACTAATGTATTTGAACCAATGATCGGAGTATTTGGGGAGATGATATATGCAAGGGTGTTCGATAATGCAGTGACGAACGTCTATACTTACCCAAATACATACAACCTTTCGGGTATCAGCAATCCCAGAATTCGAAGGCAGGTGATGCAAGCTGATGTATCACTCAACAGAATTTGCTTTTTCCTACTCTGTTGTATATTGTTGTGTCTTCTTCTGTTCTGA 762 0.4567 MALDQYFDETISQIDSFTAGKSSLGKWNAISETDANGPGGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLDHFHSTPGEDLELQSPQCPVCKAEISQASLVPLYGRGQTTNTSKGKGHQIPRRPQGPAFGFNTQISTGHSSIHPPASQFLDHPSPYQAQPFNSVPSNYNTHFARPGVSMTNVFEPMIGVFGEMIYARVFDNAVTNVYTYPNTYNLSGISNPRIRRQVMQADVSLNRICFFLLCCILLCLLLF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01461 253 SUPERFAMILY RING/U-box 25 98 - -
Pte1g01461 253 CDD RING-HC_AtRMA-like 41 94 - -
Pte1g01461 253 Pfam Zinc finger, C3HC4 type (RING finger) 43 92 IPR018957 GO:0046872
Pte1g01461 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte1g01461 253 MobiDBLite consensus disorder prediction 111 135 - -
Pte1g01461 253 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Pte1g01461 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 106 IPR013083 -
Pte1g01461 253 ProSiteProfiles Zinc finger RING-type profile. 43 93 IPR001841 -
Pte1g01461 253 SMART ring_2 43 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01461 Pte-Chr1 36142508 36145590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01461 33 254 C3H Transcription Factor Family AT4G28270 37.118 4.18e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01461 K10666 - jre:109019709 274.248