Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01447 ATGGGATGTTTGGTCTCGAACATGTTTAATTCAAAGTTCTGGTTATGTAAGAGAAGCGGACTAGGATTTTTGTTTCAGGTTTTGTATGGATTGTGGATTGGCGTTGCACTCCTTCAACCAGTGGATTGTCTGAGACCATTGAGGGAGAGAACACGGTCCTGGGGCGATGAGTGGGTATACATAAGAAAAGATGAAATTGAGTTAGGTCAATGGAACATAACAGGAACATACAGAGGTTCTTGGAAATTTCTGGATAACACAAATATCTCTACTAGATTTCCTGATATTAGAAAGTCCAATGGAAATTCTGTGATTGAATTAGTTACGATACCAACAAAAATAACTGGTGTGCATTATGTTCAGGGGGTAATCATTTTTCACGATGTCTTTGACAAAGAGCATAATGTTGGAGGTGCTCAGATCAGGGTGGAAGGTGTATACATATGGCCATTTAGACAGCTACGAATGGTTGCTAACAGTGGGAAAGGAGAGTCAAGGCAGGAAGAAGATTATATTCTGTCCAATCCTTATCATTTGCTTGGAGTGTTCTCATCTCAAGTATTCCAAGAATCTTCTCGAGAAAAGATGTGGAGAAGAAAACATTCACCGATGCAGGATATGGGGAAGCATTGTAATATCGAAATTGCAGCACAGATATCACGTGTATCTTCCTCCAAAAATGAGGGAGAACACGATCAATTTCATCTTGAAGGATTGATGGAGAGCCCTTCAGCAGATGATGACAGCGATTGCTTCTCACCTTTATTCTTAAATGCAACTTCCGTCAACATTGAAGTTTACTATAACAAAGCTGTCAACTACACTTTGATGGTCACTTTCGTTTCTTTCTTGCAAGTACTCTTGTTGATTCGACAAATGGAACACAGCAGCACTCAATCTGGTGCTGCCAAGGTTTCAATTCTAATGATTGGTCAGCAGGCTATCATGGATGCTTATCTCTGTCTTTTGCATCTGACAGCAGGCATATTAGTAGAATCACTGTTTAATGCCTTTGCAACTGCTGCATTTTTCAAGTTCGTGGTCTTCTCAATTTTTGAGATGAGATATCTTCTCGCTATATGGAAGGCTAGTAGACCTATGAATAGTGGAGATGGTTGGGAGACAATGAGGCGTGAGCTTTCAGTTCTATATAGTCGTTTCTATGGGATCCTTTTGGGAGGCATTTTGCTCATGTACGAGTTCCATAATTATCTGAGGCCAATTCTTCTCCTCATGCACTCCTTTTGGATACCTCAGATAATAACCAATGTTGTTCGTGATTCGAGAAAACCATTGCATCCTTATTACATATTGGGGATGACTGCAACTCGTCTAGCAATCCCATTGTATATTTTTGGGTGTCCTAACAATTTCATGCGAATTAATCCAGACAAAAGCTGGTGCATTTCCTTAGTGATATTTATGGTACTTCAAGCTGCAATTCTACTTCTTCAGCATTATCTTGGTTCCCGCTGGTTCATTCCTCGCCAGATTCTACCTGAGAAATATAGCTACCGCAGAAGGATTGATCCAGATACAAGCCGCGCTACAGATTGTGTCATCTGCATGACTGGCATTGATTTTACTCAACAATCTAATGATTGCATGGTGACTCCATGTGATCATTTTTTCCATTCTGGTTGCTTGCAAAGGTGGATGGATATAAAGATGGAATGCCCCACTTGCCGGCGGCCATTACCACCAGCCTAA 1710 0.4076 MGCLVSNMFNSKFWLCKRSGLGFLFQVLYGLWIGVALLQPVDCLRPLRERTRSWGDEWVYIRKDEIELGQWNITGTYRGSWKFLDNTNISTRFPDIRKSNGNSVIELVTIPTKITGVHYVQGVIIFHDVFDKEHNVGGAQIRVEGVYIWPFRQLRMVANSGKGESRQEEDYILSNPYHLLGVFSSQVFQESSREKMWRRKHSPMQDMGKHCNIEIAAQISRVSSSKNEGEHDQFHLEGLMESPSADDDSDCFSPLFLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNSGDGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMHSFWIPQIITNVVRDSRKPLHPYYILGMTATRLAIPLYIFGCPNNFMRINPDKSWCISLVIFMVLQAAILLLQHYLGSRWFIPRQILPEKYSYRRRIDPDTSRATDCVICMTGIDFTQQSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01447 569 SMART ringv_2 518 563 IPR011016 GO:0008270
Pte1g01447 569 SMART ring_2 519 562 IPR001841 -
Pte1g01447 569 CDD RING-H2_TUL1-like 513 568 - -
Pte1g01447 569 FunFam E3 ubiquitin-protein ligase, putative 505 569 - -
Pte1g01447 569 Pfam Ring finger domain 518 563 IPR001841 -
Pte1g01447 569 SUPERFAMILY RING/U-box 506 568 - -
Pte1g01447 569 ProSiteProfiles Zinc finger RING-type profile. 519 563 IPR001841 -
Pte1g01447 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 569 IPR013083 -
Pte1g01447 569 PANTHER RING ZINC FINGER PROTEIN 106 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01447 Pte-Chr1 36040984 36049070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01447 518 570 C3H Transcription Factor Family AT1G53010 37.037 1.09e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01447 K23788 - qsu:112035018 979.548