Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01443 ATGAGTAGTGTTTGTGCTGAGCAGCACAAGTTTCATCATTCTCATTATCTCCTCTCCTCCAAAAAATTCTTGAGGGACATTGACATCCCACCAAGAAAGCTTCTCACTCGTCGGACACTCCAGGAACACTCAGATATGTACTCTGACTCGCCGCGCTTCTCCTCTGCTGACGAGACCCTTTTGCAAAAGTTTCTTCCTTGCAACAACGGCCTTGATGCTGACGATGATTCTGATCATCCTTATTCTTCTGATCGTTTCCGCATGTATGAGTTCAAGATACGGAGGTGCACTCGTAGCCGTAGTCATGACTGGACTGACTGTCCGTTTGCTCATCCCGGCGAGAAAGCTCGTCGTCGAGATCCGACTTTCTACCGTTACTCTGGTACGGTCTGCCCTGAATATCGCCGTGGTGCGTGTAGCCTTGGGGATAGCTGTGAATTTGCTCATGGTGTGTTTGAGACGTGGCTCCATCCATCGAGGTACAGAACTGAAGCTTGCAAAGACGGGAAGAACTGTAAACGAAAGGTATGTTTTTTCGCTCACACCCCTCGTCAACTCAGGATTGTCAATGAGAATTGTCACAGTCCTTTAGCTGAAATAGCCTGCAAGAAAAACAAGATCAACTGTTGTTTGTTTTGTCACTGCGGCGGCGGCGGAGGAGCTGGTGCTGCTGCTTCTCCGACTTCAACACTTTTAGGTATGTCTCATCTGTCTCCACCACTGTCACCGTCGCAGTCAATCTCGCCGCCTCTTTCACCCATGGAAGGAAGGAATCGAAGTGGGGTTTCTCCAATTTTTCGATATAGTGAAAGATTTGGAGGATCTGACTCATCAAGCTTAATGAGTCCTCGTCATGGAATGACAAATCACAAAGATATGTTAACTGAGCTAATGAGTTCTTTGGTGGCTATGAAACTCGGTGAAGCTTTGCCTGTTTCAACTGAACCTACTAACAGTTCACGAAGCCTGCCTTGGGTTGATGTTCCATTCAATTCTGACTATCAGCAGTTCATTCTCTCTCCTTGTACACTTCCATCATCTTCAGGGTCTGCAAATTCCTTCAATGGAAATTATTTCAACACAAAATTTGATGAGAACAGGAACAACCTCGAGAGCGGTAGGGGGTCCTCTCCAACCCCAGATATTGAGTGGGTTAATGACCTACTCATCTAA 1173 0.4655 MSSVCAEQHKFHHSHYLLSSKKFLRDIDIPPRKLLTRRTLQEHSDMYSDSPRFSSADETLLQKFLPCNNGLDADDDSDHPYSSDRFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPTFYRYSGTVCPEYRRGACSLGDSCEFAHGVFETWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRIVNENCHSPLAEIACKKNKINCCLFCHCGGGGGAGAAASPTSTLLGMSHLSPPLSPSQSISPPLSPMEGRNRSGVSPIFRYSERFGGSDSSSLMSPRHGMTNHKDMLTELMSSLVAMKLGEALPVSTEPTNSSRSLPWVDVPFNSDYQQFILSPCTLPSSSGSANSFNGNYFNTKFDENRNNLESGRGSSPTPDIEWVNDLLI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01443 390 SUPERFAMILY CCCH zinc finger 123 154 IPR036855 GO:0046872
Pte1g01443 390 FunFam Zinc finger CCCH domain-containing protein 126 188 - -
Pte1g01443 390 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Pte1g01443 390 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Pte1g01443 390 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872
Pte1g01443 390 Gene3D - 125 189 - -
Pte1g01443 390 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872
Pte1g01443 390 PANTHER UNKEMPT FAMILY MEMBER 52 389 IPR045234 -
Pte1g01443 390 MobiDBLite consensus disorder prediction 237 253 - -
Pte1g01443 390 MobiDBLite consensus disorder prediction 237 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01443 Pte-Chr1 36007660 36009199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01443 78 187 C2H2 Transcription Factor Family AT5G07500 68.182 9.28e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte1g01443 zf-CCCH 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01443 K23047 - qsa:O6P43_028831 482.256