Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01441 ATGAAGTTTAAGGCTAGTGCTTCTGAGTTTAGAGCTCTTGTGCAGGAGCTCACTGGCCAATATTCTGACGCTGAACGCTCACTGGCCAAGAGAGGTAGCCTATCTAGTGATGACATCCATTGCGATTGTTGCTTCAAGATCTTTACTATCAGTGGTTTTGAAGCGCATTCTGGTAGCGCAAAACACAGGCCTTCTGCCAATATATTCTTAGAAGATGGCAGGTCACTTTTGGATTGCCAATTGCAAGCATTGGCTTGTAATAACAAAAGAAGAAGTTTTGGGACTCTTGCTATAACAAATGGAAGTTTGCTGCAAGATGTTAATGATGATATTTGCTCTATTTGTCATTATGGAGGTGAGCTATTGCTTTGTGATCTCTGTCCTTCCTCATTCCACAGAACCTGTCTTGGTCTGAATGATCTTCCTGAAGGGGATTGGTTTTGCCCATCCTGTCGTTGCGAAATATGTCAGCAAGGTGGATTCAACAGAGATTATACAGGTGACATTAATGTTAAAGACAATTGTAAGTTTCTTAATTGTGATCAATGTGAGTGCAATTTTCACTTTTGGTGTCTGAAGAGTGAAGGGCATCATGCCCTGGAAGGTTATGGTTGTGATCCTAACAAGAATTGGTTCTGCAGCGTTAAGTGTGAGAAAATCTTTCAGGGCCTTCACAGTATCATTGGCAAAACAATTCCGTTAAGAGACAATTTGACAATGACTTTGTTGAAAATCCCGGAATCTGACAAGCCTCAAAGCTACGGTTCTGAGTCTCCTGACCTTGAAATGGCGATTCAGAATTTTAGCAAGCTCCACCTGGCTCTTGATGTAATGCACGAGTGCTTCGAGCCGGTCTTAGAGCCGGACACTGGGAAAGATCTCGTTGAGAAGGTTGTTTTCAGTAAAAGATCCAAACTTCGTCGGCTGAACTTCAGTGGATTCTACACAGCTGTGCTACAAAATAATGATGAATTGATAACTGTGACGAACATAAGGGTTTACGAAAAGAAGGTTGCAGAGGTCCCTCTTATAGGGACAAGATTCCAATTTCGTCGTCTCGGCATGTACCGCATATTGATGAATGGACTTGAAAAATTGCTTGTGTGTTCAAGATGTTCAAAACTCCAGCATTCCAACGCAACAATGGAAGAAAGGTGTTGA 1161 0.4203 MKFKASASEFRALVQELTGQYSDAERSLAKRGSLSSDDIHCDCCFKIFTISGFEAHSGSAKHRPSANIFLEDGRSLLDCQLQALACNNKRRSFGTLAITNGSLLQDVNDDICSICHYGGELLLCDLCPSSFHRTCLGLNDLPEGDWFCPSCRCEICQQGGFNRDYTGDINVKDNCKFLNCDQCECNFHFWCLKSEGHHALEGYGCDPNKNWFCSVKCEKIFQGLHSIIGKTIPLRDNLTMTLLKIPESDKPQSYGSESPDLEMAIQNFSKLHLALDVMHECFEPVLEPDTGKDLVEKVVFSKRSKLRRLNFSGFYTAVLQNNDELITVTNIRVYEKKVAEVPLIGTRFQFRRLGMYRILMNGLEKLLVCSRCSKLQHSNATMEERC* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01441 386 PANTHER PHD FINGER PROTEIN 12 19 367 IPR042163 GO:0003714|GO:0045892
Pte1g01441 386 Pfam PHD-finger 111 153 IPR019787 -
Pte1g01441 386 SUPERFAMILY FYVE/PHD zinc finger 102 153 IPR011011 -
Pte1g01441 386 Pfam VQ motif 2 23 IPR008889 -
Pte1g01441 386 Pfam Tify domain binding domain 32 82 IPR032308 -
Pte1g01441 386 SMART PHD_3 111 152 IPR001965 -
Pte1g01441 386 SMART PHD_3 153 218 IPR001965 -
Pte1g01441 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 176 IPR013083 -
Pte1g01441 386 ProSiteProfiles Zinc finger PHD-type profile. 109 154 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01441 Pte-Chr1 35976367 35977527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01441 27 367 PHD Transcription Factor Family AT5G58610 46.628 5.90e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte1g01441 TDBD 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01441 - - qsa:O6P43_015988 386.726