Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01437 ATGGCTTCGTTGTTTAAGGATCCATCAAAGCTTTCACAATATCGTGATAGGAGATTTCCGGGGTCACAAGAAGAGTTTGAACGTACACTTCTGGCAACAACAACCGTTTACATTGGGAACATGTCATTCTATACGACTGAAGAGCAGGTGTATGAGCTATTCTCTAGAGCTGGAGAAATCAAGAAAATCATCATGGGTTTGGATAAGAACTCGAAAACACCCTGTGGCTTCTGTTTCGTGATATATTACTCACGAGAAGACACTGAGGATGCTGTCAAATATATTAGTGGGACAATATTAGATGATCGTCCCATTCGTGTTGATTTTGACTGGGGGTTCCAAGAAGGCCGACAATGGGGCCGTGGTCGAAGTGGTGGCCAGGTACGAGATGAGTATCGTACGGATTATGATCCTGGTAGAGGTGGTTATGGTAAGTTAGTCCAGAAAGAGTTAGAAGCTCAGAGGCAGCTTGTAGACTATGGTGCTGGATCGTTGGCTTCTTTTCCACCAGTCATTGCACCTCAATATGGTAGACATGGGGGAGGCCATAGTTATGGTGGTTCCTACAGGCATGGTAGAGATTACCACCGGAAGCGACACCGAGATGATGACCGCCATGCTCGTGAGCCTTCCAAGAGATCCTCAGATCATGATACAAGAAGGACCTCTGATCATGACTCTAGACCGGAAAAGAATCCACGATTTCGTGAGAGTGGCGATTCTGATGAGGAAGATGAAGATGATCAGAAGAGACGAACTTAG 762 0.4567 MASLFKDPSKLSQYRDRRFPGSQEEFERTLLATTTVYIGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVIYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGAGSLASFPPVIAPQYGRHGGGHSYGGSYRHGRDYHRKRHRDDDRHAREPSKRSSDHDTRRTSDHDSRPEKNPRFRESGDSDEEDEDDQKRRT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01437 253 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 251 IPR027157 GO:0000339|GO:0005846|GO:0045292
Pte1g01437 253 MobiDBLite consensus disorder prediction 177 253 - -
Pte1g01437 253 MobiDBLite consensus disorder prediction 124 138 - -
Pte1g01437 253 CDD RRM_NCBP2 36 113 IPR034148 -
Pte1g01437 253 MobiDBLite consensus disorder prediction 197 253 - -
Pte1g01437 253 Gene3D - 6 150 IPR012677 -
Pte1g01437 253 MobiDBLite consensus disorder prediction 120 141 - -
Pte1g01437 253 SUPERFAMILY RNA-binding domain, RBD 27 144 IPR035979 GO:0003676
Pte1g01437 253 SMART rrm1_1 35 108 IPR000504 GO:0003723
Pte1g01437 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Pte1g01437 253 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Pte1g01437 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01437 Pte-Chr1 35952083 35955738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01437 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 6.61e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01437 K12883 - zju:107411315 399.053