Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01412 ATGGCAGAAGAAGAAAATCCTGAAGCTGATGTCATAGCCTTGTCTCCCAAGACCCTTATGGCAACTAACAGATTCTTGTGTGAAATCTGTGGGAAGGGCTTCCAAAGGGATCAGAATCTTCAACTTCATCGCCGTGGACACAATCTCCCATGGAAGCTCAAGCAAAGGACTAGCAAAGAAATAAAAAAACGTGTGTATGTTTGCCCAGAGAAGACTTGTGTTCACCACCATCCTTCAAGGGCACTCGGAGACCTAACGGGTATCAAAAAGCACTTCTGTAGAAAACATGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGCGCTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAGACATGTGGTACCAGAGAATACAAATGCGATTGTGGGACAATATTTTCACGAAGAGATAGCTTTATCACTCACAGGGCCTTCTGCGATGCCTTAGCTGAAGAAACAGCTAGACTAAATGCAGCATCCAACATGAACAACACATTAGTTGCCAATATGAATTACAGTGTTATGGGAACATCGCTAGGGCCTAGTATGGAAGCAAATTTTCCATCCATCTTCAATCCAATTTCGAACAATAATGAAACTTGTAATCAAAATGGAGGACTTTCTTTGTGGATGGGTCAAGGATCTTATCAAGTTCATGATATAATAAGCAATCGCCATGTACATGATATTCATCATCAGCTAGGACCAGCAGCTGCCACCAATGAGGCAATGTATGGGAATCCACTAGTTTCGTGCACCGATCCTCCACCAACTGACTATCAAAACTGGGTGTTCGGAAATAAGCTTTCCTCAAGTCACACTGAAGAGCTGACAAACACTTCACTTCCTCTGAGTCATAATATTGTGAAAGATGCAGCTGGAAATCAACTGATCAGTGTTCCTTCCTTGTATAGCTCTCAACATCAATCTCATCAACCATCTTCAGCAAACATGTCAGCCACTGCTTTGTTACAAAAGGCTGCTCAAATTAGTGCAACTTCATCTGATTCCTCATTCTTGAGCAGCTTTGGTTTGAAATGCAGTAATAGTCAAGTTAAAGACGGGCACAAGTACAGTGGAACATATGGCTCAAACTCAGTGATCACTAGCCTTGGAAGTGACCTAGAAAACTCAGCTTGTGATGATTTGTCACGAATGCACTATGTGAAACGTCGCCGCATTCAGACTGAGGAGAGTGCAGGAGGACAAACAAGGGATTTTCTTGGTGTTGGCGTTCAAACCCTTTGTCACCCTTCATCAATCAACGGATGGATTTGA 1287 0.4289 MAEEENPEADVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIKKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARLNAASNMNNTLVANMNYSVMGTSLGPSMEANFPSIFNPISNNNETCNQNGGLSLWMGQGSYQVHDIISNRHVHDIHHQLGPAAATNEAMYGNPLVSCTDPPPTDYQNWVFGNKLSSSHTEELTNTSLPLSHNIVKDAAGNQLISVPSLYSSQHQSHQPSSANMSATALLQKAAQISATSSDSSFLSSFGLKCSNSQVKDGHKYSGTYGSNSVITSLGSDLENSACDDLSRMHYVKRRRIQTEESAGGQTRDFLGVGVQTLCHPSSINGWI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01412 428 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 416 IPR031140 -
Pte1g01412 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 47 IPR013087 -
Pte1g01412 428 SUPERFAMILY beta-beta-alpha zinc fingers 24 121 IPR036236 -
Pte1g01412 428 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Pte1g01412 428 Pfam Zinc finger, C2H2 type 26 47 IPR013087 -
Pte1g01412 428 FunFam protein indeterminate-domain 5, chloroplastic-like 79 158 - -
Pte1g01412 428 SMART c2h2final6 25 47 IPR013087 -
Pte1g01412 428 SMART c2h2final6 101 121 IPR013087 -
Pte1g01412 428 Gene3D Classic Zinc Finger 21 48 - -
Pte1g01412 428 Gene3D Classic Zinc Finger 58 149 - -
Pte1g01412 428 FunFam protein indeterminate-domain 12-like 4 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01412 Pte-Chr1 35684407 35686795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01412 6 429 IDZ Gene Family AT1G03840 54.021 4.07e-150 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g01412 zf-C2H2 0.014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01412 K25870 - qsu:112011855 623.239