Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01405 ATGCAGGATGGGTCGGCAGCAGGACTACGATCTGCATGTGCTGCATGCAAACACCAAAGAAAGAAGTGCAACGAGAATTGCATACTTTCATGTTATTTTCCTGCAGAAAAAAACAGGGCCTTCAAAGCTGTACACAAAGTGTTTGGTGTGAGTAACATAACAAAGATTATAAAAAATGTGAAGGAAGATGAACGAAGAAGAGTGGTGGATTCATTGGTTTGGGAAGCATGCTGTAGGCAGAAAGATCCTGTTCAAGGTCCATATGGTGAATACAGAAAGCTATTTGAGGAATACATGAGGGTTTTCAATGAACTTAAACGATTCCACAGAAATGTTAATCAACAAATTGATCATCATCACGTGGTTCAAGATTTTGTTGCATGGGACAATATTAATGGAACTAATAGGATGTGCCAAGATGATATTCTTTCCTTTGTTCAAGACAAATACACAAATTGCATACAAGGACAAGAACCTAATTTCCTCCCTATGCAGCAACAACACTTGTATTTTTCAGGTGAATTCAATGGCAAAAGCATGGACTGTAACACATGGGAAGGCAATATGTAG 570 0.386 MQDGSAAGLRSACAACKHQRKKCNENCILSCYFPAEKNRAFKAVHKVFGVSNITKIIKNVKEDERRRVVDSLVWEACCRQKDPVQGPYGEYRKLFEEYMRVFNELKRFHRNVNQQIDHHHVVQDFVAWDNINGTNRMCQDDILSFVQDKYTNCIQGQEPNFLPMQQQHLYFSGEFNGKSMDCNTWEGNM* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01405 189 Pfam Lateral organ boundaries (LOB) domain 12 107 IPR004883 -
Pte1g01405 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 116 - -
Pte1g01405 189 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01405 Pte-Chr1 35630875 35631549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01405 12 130 AS2 family AT1G06280 52.941 5.42e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte1g01405 LOB 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01405 - - vra:106780610 178.718