Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01402 ATGAGCAGTGAGGGTCATGATTATGAATATTCTCACCCTGATTTTCTGGGACGAAAGAACGATGGTGAATTCAATAGCACGATAATGGTCACAGCTGTAATTACCTTAACTACTGTCATATTTGTAGTTGTTACACTTCATTTGTACGCAAGGTATGTTCTACGGCGTCAAGCTCGTGGCCGAGCTGCCATCGGTCAACTCAGTCTAACCGTAGCTCATGCCCAGGCTAGTGAACCACCTAGGAGGACAGGTCTTGACCCGGCCATGATTGTCAATCTGCCTAGCTTTGCGTTCAAATCACAACACTTGGGTCATCAAGATAGGAAGGATGCAGCCATCGAATGTGCAGTTTGTTTGAGCAGCTTAGAAGATGGAGACATGGCGAGGTTGCTTCCTAATTGCAAGCATGTTTTCCATTTGCAGTGCATTGATAAATGGTTGGTTGCAAACTCCACTTGTCCCATTTGTAGAACAATGGCTGAACCGCGGATTAAGCCGGAACCGCGTGAGGGGCCGGTGATTGGTTTAGTCGGCAGTGACATTAATGAGAGTACATCTTCAGTTCCAACTTTGGATGTTATGAATGATTCTTCTATGGCGCCATTTGCTGAAAGTACATCAGATGGGGCACCTGAAGTTTCAGCCAAAATGATCAATGGCTCCAATTCAAGGTTGAGGTCATTCAGAAGGATGCTTAGCAGGGAAAGATCTTCAAGGAGAATTGAACCTCTTAACCACGGTGTCATGGAAGACTTGGAGAGACAGTGA 768 0.4557 MSSEGHDYEYSHPDFLGRKNDGEFNSTIMVTAVITLTTVIFVVVTLHLYARYVLRRQARGRAAIGQLSLTVAHAQASEPPRRTGLDPAMIVNLPSFAFKSQHLGHQDRKDAAIECAVCLSSLEDGDMARLLPNCKHVFHLQCIDKWLVANSTCPICRTMAEPRIKPEPREGPVIGLVGSDINESTSSVPTLDVMNDSSMAPFAESTSDGAPEVSAKMINGSNSRLRSFRRMLSRERSSRRIEPLNHGVMEDLERQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01402 255 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pte1g01402 255 CDD RING-H2_EL5-like 114 157 - -
Pte1g01402 255 Pfam Ring finger domain 114 157 IPR001841 -
Pte1g01402 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 162 IPR013083 -
Pte1g01402 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 162 - -
Pte1g01402 255 SMART ring_2 115 156 IPR001841 -
Pte1g01402 255 MobiDBLite consensus disorder prediction 229 255 - -
Pte1g01402 255 MobiDBLite consensus disorder prediction 199 218 - -
Pte1g01402 255 FunFam E3 ubiquitin-protein ligase ATL6 73 163 - -
Pte1g01402 255 SUPERFAMILY RING/U-box 114 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01402 Pte-Chr1 35607163 35608369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01402 1 256 C3H Transcription Factor Family AT2G42360 42.322 1.06e-51 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01402 K19038 - jre:108993654 197.593