Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01361 ATGAAATACATGAGGTTCTTACGTAAGCGTATGAACACCAAGCCTTCTCACGGTCCCATCCATTTCCGAGCTCCGGCCAAGATCTTATGGCGGACCATTCGTGGTATGATTCCTCACAAGACAAAGAGGGGAGCTGCTGCACTTGCTCGTTTGAAAGCATACGAAGGCGTCCCACCACCATACGACAAGATGAAGAGGATGGTTATTCCTGATGCTCTCAAGGTTCTGAGGCTTCAGAAGGGACACAAGTACTGCTTGCTGGGCAGGCTCTCCTCAGAGGTCGGATGGAACCACTATGAAACCCATTAA 309 0.4984 MKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNHYETH* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01361 102 ProSitePatterns Ribosomal protein L13 signature. 33 56 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pte1g01361 102 PIRSF RPL13p_RPL13Aa_RPL16e_RPL13o 1 100 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte1g01361 102 Gene3D Ribosomal protein L13 1 98 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pte1g01361 102 Pfam Ribosomal protein L13 8 58 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte1g01361 102 SUPERFAMILY Ribosomal protein L13 1 98 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pte1g01361 102 PANTHER RIBOSOMAL PROTEIN L13 1 101 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte1g01361 102 NCBIfam 50S ribosomal protein L13 2 97 IPR005755 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01361 Pte-Chr1 35104589 35107807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01361 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G24830 92.079 2.26e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01361 K02872 - pvy:116108982 205.297