Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01359 ATGAAAATAATAAGTCTGATTTGGATCATCAGAATTCTAATGGCTAATGCAGAAACTGAAGACAAGCTCAAAGTTGCAAGAGTGGATCATGAGAACTTAAAACAAACTATGGAGGAAGAAAGAGCAATACTACTCAGAAATGATGAAGACGTACGTGCTGCCTCAGACACTAATTCAGTGCAGCTGAATTTTCTTGGTGAAGATCTTCAGAAAAACTCTCAACAGGGATCAAAAAGCAAAAAGAAAAGACCAAGAATCATCAAGACCATTGCGGAAGTTGAGAACCAAAGGATGACTCACATTGCAGTTGAAAGAAATCGAAGAAAGCAAATGAATGAACATCTTCGTGTCTTAAGGTCTCTCATGCCTGGCTCTTACGTTCAAAGGGGGGACCAAGCTTCGATAATAGGAGGAGCTATTGAGTTTGTGAGGGAATTAGAGCAGCTTCTGCAGTGTTTGGAGTCACAGAAAAGGAGAAGGCTATTTGGAGAAGGAGCAGCAACCACAAGACAAGCTGGAGATTCTTCTGCTCTTGTAATTCAACAGTCAAATCAGAAGCCACCACTGTTTCCTCCATTGGCTATACCAAATGAGCAAATGAAACTTGCCATGGAGTTTGAGACCGGGGCTTCTTGA 636 0.4135 MKIISLIWIIRILMANAETEDKLKVARVDHENLKQTMEEERAILLRNDEDVRAASDTNSVQLNFLGEDLQKNSQQGSKSKKKRPRIIKTIAEVENQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLFGEGAATTRQAGDSSALVIQQSNQKPPLFPPLAIPNEQMKLAMEFETGAS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01359 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 161 IPR036638 GO:0046983
Pte1g01359 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Pte1g01359 211 PANTHER TRANSCRIPTION FACTOR FAMA 39 197 IPR044283 GO:0003700|GO:0010052
Pte1g01359 211 FunFam Basic helix-loop-helix transcription factor 86 161 - -
Pte1g01359 211 Coils Coil 16 36 - -
Pte1g01359 211 CDD bHLH_AtFAMA_like 98 168 - -
Pte1g01359 211 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
Pte1g01359 211 Gene3D - 93 162 IPR036638 GO:0046983
Pte1g01359 211 SMART finulus 101 152 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01359 Pte-Chr1 35101339 35102128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01359 43 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 73.228 5.63e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte1g01359 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01359 K26213 - qsu:112039857 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01359 1 35101339 35102128 Pte1g01359 1 35101339 35102128 RCT