Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01348 ATGGCCATGAGAGCTGCGGCGGCGACGTTGGCAGAGGCGACGCCCTCCCGCCTAAGGAGACTCTTCTGTAGTTCAGTCCCATCCTTTATTCCTCCCCCAATCCCGGGAAACGTTCCTGCCCGGGAGACTGCCGAGCCAAACTGCAATCTTTTCGTTTCCGGACTCAATAAAAGAACTACAACTGAAAAACTACACGAGGCATTTTCTGCATTTGGTGAAGTTGTTCATGCAAGGGTGGTGACTGACAGGGTATCAGGATTTTCTAAAGGGTTTGGTTTCGTACGGTATGCTACAATTGAAGAGGCTGGCAAAGGCATTGAGGGTATGGATGGCAAGTTTCTTGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACAACCCCCTCCACCGTCTAATAACTTCAACGATTCGCCATATGGCCGGCAGTGA 435 0.5011 MAMRAAAATLAEATPSRLRRLFCSSVPSFIPPPIPGNVPARETAEPNCNLFVSGLNKRTTTEKLHEAFSAFGEVVHARVVTDRVSGFSKGFGFVRYATIEEAGKGIEGMDGKFLDGWVIFAEYARPRQPPPPSNNFNDSPYGRQ* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01348 144 SUPERFAMILY RNA-binding domain, RBD 28 142 IPR035979 GO:0003676
Pte1g01348 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 116 IPR000504 GO:0003723
Pte1g01348 144 FunFam RNA recognition motif-containing protein 27 138 - -
Pte1g01348 144 PANTHER NUCLEOLAR PROTEIN 8 32 133 - -
Pte1g01348 144 SMART rrm1_1 49 122 IPR000504 GO:0003723
Pte1g01348 144 MobiDBLite consensus disorder prediction 125 144 - -
Pte1g01348 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Pte1g01348 144 Gene3D - 33 134 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01348 Pte-Chr1 34959034 34962017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01348 49 128 Eukaryotic Initiation Factors Gene Family AT2G23350 36.250 2.94e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01348 - - cpap:110812330 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01348 1 34959034 34962017 Pte1g01348 1 34959034 34962017 RCT