LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01345	ATGGCAGATGATCAATTTTCAGCAAGTGGAAACTGGTGGGATTCAGGGAGGAATAGGTATGATAATGGGGCATCACAGTCTTCCTCCTCAGGACTTACTACTATGGCAAACTTTGCTTGGCAACCAGCTGATATGGTGGACACCAAGCCAAGGTCATCCATGGGTTCCATGTCTATGTCTGATAATTCATCTATGGTGTTTCACGACAACCAGAAACCTCAAACTTCTGATTCTGCTGCTTCCTCCGATCCCAACTTGCACATGATGGCTTTAGGTCTTTCTAATCAACCTTTGGATTGGAACCAACCACCATTACTCCATGGTGAGAAGTCGGCACCAGCGAGCAGTTTCCGGTCGATGCTCCAAGATAAGCTGAATACAAACCCAAATTTTCGACAAGAAACTGGGATCGCGTTATCTCAAGTTCAATGGAGAGAAAAATTGTTCTCTGGTGGATGCAATTCTGAGTCCTCCACCAATGAATTCAAGCAAGTTAACAGTGGTTTCTCTTTAGACCAACCTCACCAGTTTAGTCCTCAATATAGCTGCGGTGACAGAACTATTGTATGTCAAGGCCTACCCTCAACTTTTCAGGTGGACTCATCTGCTTTATATGGCAACCCATCGATACTACAAGGCCTACTGGGAACTGAAAGCAATCAAACACAGCAGCCTTCCATCAATATGCCCTACCCAGCAAGCTATGGATTCAATAATTCTTGTGACCTCGTGCCTTCTTGGTCCAAAGTTCCTCAATTTTTAAGGTCCTCGACACCTAAACAGCAAGCATCCCACAACCAGCTAAGCTTCACAGACAACACCCCTATTTGTAATACAGCTGAGATATTGAATAAGGATATCCGACCAAGCCATTTTCCTTCATCACAAACTCCATTTTCATCCCCAAGTTTTGATCTACGGTCCAAGAATATATCATCGAAAATGAGGGACTCAAATGTTTTTGTGAAGAAAAGTTTCAGTACTGAAACAGCATCTAAGAGGCCTCGAAGTGAAGCCCCATCTCCTATGCCAGGTTCCAAGGTGATCAGGAAAGAGAAGATGGGGGACAGAATCACTGGACTGCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTCTCTGAAGCCATTGAGTACATAAAATTCCTCCATGAGCAAGTGACTTTACTGATCTCTCCGTATATGAAAAGTGGAGGTTCCATGCAACATCAACAGCAGGTACGCAATATCATAACCTAA	1251	0.438	MADDQFSASGNWWDSGRNRYDNGASQSSSSGLTTMANFAWQPADMVDTKPRSSMGSMSMSDNSSMVFHDNQKPQTSDSAASSDPNLHMMALGLSNQPLDWNQPPLLHGEKSAPASSFRSMLQDKLNTNPNFRQETGIALSQVQWREKLFSGGCNSESSTNEFKQVNSGFSLDQPHQFSPQYSCGDRTIVCQGLPSTFQVDSSALYGNPSILQGLLGTESNQTQQPSINMPYPASYGFNNSCDLVPSWSKVPQFLRSSTPKQQASHNQLSFTDNTPICNTAEILNKDIRPSHFPSSQTPFSSPSFDLRSKNISSKMRDSNVFVKKSFSTETASKRPRSEAPSPMPGSKVIRKEKMGDRITGLQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTLLISPYMKSGGSMQHQQQVRNIIT*	417

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01345	416	MobiDBLite	consensus disorder prediction	326	348	-	-
	Pte1g01345	416	MobiDBLite	consensus disorder prediction	46	85	-	-
	Pte1g01345	416	MobiDBLite	consensus disorder prediction	1	31	-	-
	Pte1g01345	416	MobiDBLite	consensus disorder prediction	51	83	-	-
	Pte1g01345	416	FunFam	Transcription factor bHLH123 family	347	410	-	-
	Pte1g01345	416	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	338	387	IPR011598	GO:0046983
	Pte1g01345	416	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	350	401	IPR036638	GO:0046983
	Pte1g01345	416	CDD	bHLH_AtbHLH_like	350	394	IPR045239	-
	Pte1g01345	416	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	106	409	-	-
	Pte1g01345	416	Gene3D	-	349	414	IPR036638	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01345	Pte-Chr1	34886686	34890059	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01345	111	409	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G20640	40.395	8.64e-37	136

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01345	-		-	qsu:112024716	440.654

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