LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01343	ATGTCAATCTTCACCTTAGCTCATCTGCTAGTGTTTACTTCTCTCAAATTGTTCACAGCAGTTGAATCCATTTCTCGGTCTCACTTTTTCAGTGATCATGGCTTCACTTCGGGTTCTAAGCAAGAAAAATTTAAACTGGGTTTTTTAAGAACAGACGATAACCCACTTTCTCATAATGACATGTATATAGGTACATACATGAGAAAGTACCTTCAAGTGGATAACCTACAACCTAGTCCTTCACCAGGATTAAGTCCCAGTTCTGTTTCTCATATATGTGATACTCATGGTCTCTGCGGAGTATATGGGGTCTGTAATGCTAGTAAGTCACCAGTTTGCGAATGCTTGCAAGGATTTCGGCCAAAGTCCCAACAGGAATGGAACTCAATGAATTGGACTCAAGGGTGCGTGAGAGATAAGGCTTTGAATTGTAATGCTAAAGACGGAGATAGCTTTATCAGCTTGTTGGACGTTAAATTACCAGATGGTACTCAAAGTTTTATTGACCAGAGCATTGGTTTACAGGAATGCAGACAGAATTGTATCAATAATTGTTCTTGCACGGCATACACGATAGTGACTCACAACGGTACAGGAGGAAATGGCGATTTTTTCCCATATGGCTGTGCCATGTGGTTTGTTGATCTCATTAACATTAAGCAATTGTCGAGCGGTGGGCAGAACCTGTTTGTTAGAATAGCAGCTTCGGAATTAGGTAACAAGCAAGGAAAAGGTGGGAGCAAGAAGATTGCTGCAGTTGTGAGTGTTACTGTCACTGCCACAGCTATTGCAGTTGCTTTAGTTGGCTGTTACTATTTCAAAAGGAGAAAACTCAAGCGAGGAGTACAGAAAACTAATGTAAAACAACAAAACAGTGACATGCAAGATCTGGACCTCCCACTTTTCAATCTAGTGACTATAATCACTGCCACAAACGACTTTGCAATGAGTAACAAGCTAGGAGAAGGTGGTTTTGGGCCCGTATATTGGGGCAAACTAGAGGATGGTCAAGAAATTGCTGTGAAGAGGCTATCGCAAAGCTCAGGACAGGGCTTGACGGAGTTCAAGAATGAAGTGAAACTGATTGCCAAACTTCAGCACCGCAATTTGGTTAGGCTTCTTGGTTGCTGCATTCAGGAAGAGGAAACAATGTTGGTATATGAATACATGCCCAACAAAGGCCTAGACTCCTTTCTTTTTGATGAAACTAAACGGAAACTGCTAGATTGGCCTAAGCGCTTTCAGATTATCTGTGGGATCGCTAGAGGTCTTCTTTATCTACATGAAGAATCCAGACTAAGAATTATCCACCGAGACCTCAAAGCTAGTAATGTTCTTCTAGACTATCAGTTTAACCCAAAAATTTCAGATTTTGGCTTGGCCAGAACTTTTGGTGGAGATCAGACAGAAGGGAACACACGAAGAATAGTTGGCACTTTTGGCTATATGGCTCCTGAGTATGCTATAGATGGGTTATTCTCGGTAAAATCTGATGTGTTTAGCTTCGGAATATTGTTGCTAGAAATCATAAGCGGCAAAAGAAATAAAGGATTTTACAATCCTAATCACTTCCAGAACCTAATTACTCATGCCTGGAAACTGAGGAAGGAAGGCAGAGCCTTAGAAATGATTGACCCCATTTTACAAGAAGAATCATGCAATCTTGGAGAAATTTTGCGCGTTATCCATGTCAGTCTTTTGTGTCTTCAAAGGCATCCAGAGGAGAGGCCCAGTATGTCATCGGCTGTTCTAATGTTGGGAAGTGATGTTGAAATGTCAGAACCTAAACAGCCTGGGTTTCTTATGGAAAGGAATCCATCTGAAGCTGAGTCGTCCTCAAGTAAGCAGAAAACAAGCTCGACCAACGACATTACCATTAGCCTTATAGAAGCTAGATAG	1899	0.4139	MSIFTLAHLLVFTSLKLFTAVESISRSHFFSDHGFTSGSKQEKFKLGFLRTDDNPLSHNDMYIGTYMRKYLQVDNLQPSPSPGLSPSSVSHICDTHGLCGVYGVCNASKSPVCECLQGFRPKSQQEWNSMNWTQGCVRDKALNCNAKDGDSFISLLDVKLPDGTQSFIDQSIGLQECRQNCINNCSCTAYTIVTHNGTGGNGDFFPYGCAMWFVDLINIKQLSSGGQNLFVRIAASELGNKQGKGGSKKIAAVVSVTVTATAIAVALVGCYYFKRRKLKRGVQKTNVKQQNSDMQDLDLPLFNLVTIITATNDFAMSNKLGEGGFGPVYWGKLEDGQEIAVKRLSQSSGQGLTEFKNEVKLIAKLQHRNLVRLLGCCIQEEETMLVYEYMPNKGLDSFLFDETKRKLLDWPKRFQIICGIARGLLYLHEESRLRIIHRDLKASNVLLDYQFNPKISDFGLARTFGGDQTEGNTRRIVGTFGYMAPEYAIDGLFSVKSDVFSFGILLLEIISGKRNKGFYNPNHFQNLITHAWKLRKEGRALEMIDPILQEESCNLGEILRVIHVSLLCLQRHPEERPSMSSAVLMLGSDVEMSEPKQPGFLMERNPSEAESSSSKQKTSSTNDITISLIEAR*	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01343	632	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	390	594	-	-
	Pte1g01343	632	CDD	PAN_AP_plant	142	234	-	-
	Pte1g01343	632	Pfam	PAN-like domain	144	219	IPR003609	-
	Pte1g01343	632	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	94	612	-	-
	Pte1g01343	632	Gene3D	Phosphorylase Kinase; domain 1	273	389	-	-
	Pte1g01343	632	SMART	ntp_6	147	233	IPR003609	-
	Pte1g01343	632	ProSiteProfiles	PAN/Apple domain profile.	144	234	IPR003609	-
	Pte1g01343	632	Pfam	Protein tyrosine and serine/threonine kinase	316	581	IPR001245	GO:0004672\|GO:0006468
	Pte1g01343	632	SMART	serkin_6	314	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g01343	632	Gene3D	Transferase(Phosphotransferase) domain 1	390	598	-	-
	Pte1g01343	632	ProSiteProfiles	Protein kinase domain profile.	314	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g01343	632	SUPERFAMILY	Protein kinase-like (PK-like)	291	586	IPR011009	-
	Pte1g01343	632	Pfam	Domain of unknown function (DUF3403)	590	632	IPR021820	GO:0004674
	Pte1g01343	632	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	279	389	-	-
	Pte1g01343	632	MobiDBLite	consensus disorder prediction	594	632	-	-
	Pte1g01343	632	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	435	447	IPR008271	GO:0004672\|GO:0006468
	Pte1g01343	632	MobiDBLite	consensus disorder prediction	606	632	-	-
	Pte1g01343	632	CDD	STKc_IRAK	320	586	-	-
	Pte1g01343	632	Pfam	S-locus glycoprotein domain	87	123	IPR000858	GO:0048544

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01343	Pte-Chr1	34875222	34878702	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01343	265	633	Receptor kinase-like Gene Family	AT4G23140	52.493	1.96e-129	394

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pte1g01343		PK_Tyr_Ser-Thr	1.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01343	-		-	pvy:116139824	657.521