LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g01335	ATGTGTCCTAACATCGACGAAATAAGTCAGCAACGTTTTTTGACCGGTGATTTATCTCATGCTTTGAGCCGAAGTCTACCATGTTCTTGTGGTACAGGTTCTCCATTACTGCAGTCTTCCATCCTTTTCCTCATCCAACGCAACTGCTGGATTTCAGTGGATATGTTTCGGTCAATCTCTTTTGTCATCACCTATCTTCTCGTTTTTACAACTTCTCCACAAGTTTCTGCAGCAAAAACATCCTACCCGCAATCAGCTGAGCCTTTTGATTCCTACTTCCTAAGAAAGGCAGAAAGGTACCTCCAACAAGCTACACCAGTACTGGCCGGCCCACCTCCAAGTCCTTCTCCACAACCAAGCCCCACTTCTGGTTTAGACCATTGTGACAACGGTACTCATGGCTTGTGTGGAACTTATGGAATATGTACGATTGGGAATTCGTCATTCTGTCAATGCCTCCAGGGCTTCAAGCCCAAATTTACGCAGGAATGGAGCTCGAAGAACTGGTCTCAAGGATGCGTTCGTGTCACACAGTTGAGTTGTAAGGACAAAGACGCTGACGGCTTCTTCAAACTGTCTCGGCTTAAATTGCCAGATGGTTTGCAGGTTTTGCAAGATCGAAGCATTGGGTTAGAGGAATGCGGACAACAATGTTCCAGAAATTGTTCTTGTACAGCGTACACCATGGTCAACAGTACTGATGTAGTGGGAGATGGAGCTTTATTTCCATACGGTTGTGCCTTGTGGTTCAGTGATTTGATTAACATGAGAGAGTTATCAACAGGCAGTGTTGGTGGGCAAGATCTATATGTTCGTATAGCTGGTAATATATCAGCCAACCATCAAAGCCAGGGTCACAAGGCAAAGTTCGCGGGAGTGATCAGTGGCGCCGTAATTGCTGCTATGTCTTCAGTGGTTTTAGTAGTGTGCTGCATTTTCAAGATCAAGAGGAGAAACTACGCAAGAGCTGAGATAAATAACAGTAATACAGAAGGAGAAAGCAAGCAGGCGGAGGATTTGGAACTCCCATTGTTCGAACTAGCAGATGTGATTTCTGCCACACATGACTTCTCAATCAACAACAAGCTTGGTGAAGGTGGCTTTGGGCCTGTATACTGGGGTAAGTTAAAGGACGGTCAAGAGATTGCAGTGAAGAGGCTCTCCAAAAGATCAGGACAAGGATTGACTGAGTTCAAGAATGAAGTTAAACTGATAGCCAAAGTTCAACACCGGAATCTAGTAAAGCTTCTTGGTTGTTGCATCCAAGGAGAAGAGCAAATGTTGGTATACGAATACATGCCTAACAACAGCCTCGACTCCTTTCTTTTTGATGAGACTCGAAGCAAAGTGCTGGACTGGCCTAAGCGTTTCCATATTATCCGAGGAATTGCAAGAGGGCTACTTTATTTACATCACGACTCAAGACTAAGAATTATCCACAGAGACCTCAAAGCAAGTAACATTTTACTTGATACTCAGCTTAACCCTAAAATTTCAGATTTTGGCATGGCTAGAATTTTCTGTGGAGATCAAACTCAAGAAATGACCAAAAGGGTGGTGGGTACTTATGGTTATATGGCTCCTGAATATGCTATAGATGGATTATTTTCCGTAAAATCCGATGTCTTCAGCTTTGGTATCCTCTTGCTAGAGATCATTAGTGGCAAACGAAATACAGGTTTTTCCAATTCAAATGACTTCCACAATCTTATTACGTTCGCCTGGAAATTAAGAAAGGAAGGAAGGCTGCTGGAAATAGTTGACACATATCTACTAGATGATGATGAGAAGGAGGAGCCGTGTAACCAATCAGAAATTTTGCGGTGTGTGCATATCAGTCTTCTCTGCCTTCAGCGGCATCCGAAGGACAGGCCTAGCATGGCGTCAGTTATTCAAATGCTGGGAAGTGAAATTGAATTGTGTGAACCCAAACAACCTGGGTTCCTTCTAGGAAATGATCCAGTTGAGGAACAACCATTAGTTAAGCAGAAATACTCGAGCTCATCCAACGACATAACAATCAGCATCTTGGATGGTCGATAG	2043	0.4351	MCPNIDEISQQRFLTGDLSHALSRSLPCSCGTGSPLLQSSILFLIQRNCWISVDMFRSISFVITYLLVFTTSPQVSAAKTSYPQSAEPFDSYFLRKAERYLQQATPVLAGPPPSPSPQPSPTSGLDHCDNGTHGLCGTYGICTIGNSSFCQCLQGFKPKFTQEWSSKNWSQGCVRVTQLSCKDKDADGFFKLSRLKLPDGLQVLQDRSIGLEECGQQCSRNCSCTAYTMVNSTDVVGDGALFPYGCALWFSDLINMRELSTGSVGGQDLYVRIAGNISANHQSQGHKAKFAGVISGAVIAAMSSVVLVVCCIFKIKRRNYARAEINNSNTEGESKQAEDLELPLFELADVISATHDFSINNKLGEGGFGPVYWGKLKDGQEIAVKRLSKRSGQGLTEFKNEVKLIAKVQHRNLVKLLGCCIQGEEQMLVYEYMPNNSLDSFLFDETRSKVLDWPKRFHIIRGIARGLLYLHHDSRLRIIHRDLKASNILLDTQLNPKISDFGMARIFCGDQTQEMTKRVVGTYGYMAPEYAIDGLFSVKSDVFSFGILLLEIISGKRNTGFSNSNDFHNLITFAWKLRKEGRLLEIVDTYLLDDDEKEEPCNQSEILRCVHISLLCLQRHPKDRPSMASVIQMLGSEIELCEPKQPGFLLGNDPVEEQPLVKQKYSSSSNDITISILDGR*	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g01335	680	Coils	Coil	320	340	-	-
	Pte1g01335	680	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	138	662	-	-
	Pte1g01335	680	Gene3D	Transferase(Phosphotransferase) domain 1	433	643	-	-
	Pte1g01335	680	SMART	serkin_6	357	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g01335	680	SMART	ntp_6	184	273	IPR003609	-
	Pte1g01335	680	CDD	STKc_IRAK	363	634	-	-
	Pte1g01335	680	Pfam	Protein tyrosine and serine/threonine kinase	358	634	IPR001245	GO:0004672\|GO:0006468
	Pte1g01335	680	Pfam	Domain of unknown function (DUF3403)	638	680	IPR021820	GO:0004674
	Pte1g01335	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Pte1g01335	680	ProSiteProfiles	PAN/Apple domain profile.	181	274	IPR003609	-
	Pte1g01335	680	Pfam	S-locus glycoprotein domain	126	160	IPR000858	GO:0048544
	Pte1g01335	680	ProSiteProfiles	Protein kinase domain profile.	357	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte1g01335	680	Pfam	PAN-like domain	181	256	IPR003609	-
	Pte1g01335	680	FunFam	receptor-like serine/threonine-protein kinase SD1-8	328	432	-	-
	Pte1g01335	680	SUPERFAMILY	Protein kinase-like (PK-like)	339	634	IPR011009	-
	Pte1g01335	680	Gene3D	Phosphorylase Kinase; domain 1	317	432	-	-
	Pte1g01335	680	CDD	PAN_AP_plant	177	274	-	-
	Pte1g01335	680	MobiDBLite	consensus disorder prediction	106	125	-	-
	Pte1g01335	680	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	433	642	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g01335	Pte-Chr1	34753231	34756557	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g01335	295	648	Receptor kinase-like Gene Family	AT4G23230	53.482	2.94e-125	384

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pte1g01335		PK_Tyr_Ser-Thr	5.2e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g01335	-		-	qsu:112024700	620.928