Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01327 ATGGTGAAATCTTCTAGTGAAAAAAATGGAGTGAAGAAAGGTCCTTGGACTCCCGAAGAGGATCAGAAGCTGATTGATTATATTCAGAAACATGGCCAAGGGAAATGGCGTACACTCCCAAAGAATGCAGGATTGAAAAGGTGTGGAAAGAGTTGCCGGTTACGCTGGACCAACTACTTGAGGCCTGACATCAAAAGAGGAAGCTTCTCTTTGGAAGAAGAACAAGCTATCATCCAGCTCCATAGTCTTCTCGGAAACAAGTGGTCTAGTATTGCTTCTAGATTACCAGGAAGAACAGATAATGAAATCAAGAACTACTGGAATACTCACATCAAGAAGAAGCTACTGAAGATGGGAATAGATCCAGTGACTCACGCACCACGTTTTGATCTTCTCCAACTCTCCTCAATTCTCAGCTCGTCTCTTTACACTTCACTTCAACTAAGTTATCCCACAGATCCATTTGGGGTTAGCAATGCAGTAAACCAAAACCTGCTAAGTTTAGCTGCAGCACTATTGTCATCACAGTACAGCAACCCTGATAATACTGTAGTTCAAAGTCTAGAATGCCATGTTCCCAATGTTTCGTTCCCATCCCAACCAGTGAAGAATAATACTCTCCAAGTTAATGATCGACCTAATCAACTTTGTGGAACGACTACTACTTCAATCAGCACTCCTCTAAATTGTGAGACTCCATTTGAGAAAGCAAGACTGGATCAATTCTCTCCAGCTATGGCTAACTTGAGCTTCCAAAATAGCCTACCAAATTTGTGGCAATACAGTGAAGGTCAGTCAGATCAGCATTCTGATTGTGCTGCTAATACTGTGGATGATTCAGCGAAGTTGGATTCGTTCATTGAGCTCCTAAGAAGTCAGATTTCACAACCAAATCAAGATACCGAGAGCTTCCCAACTAGCTTTAGTAGCCTTCTGTCGTCAACAGCTACATCTTCATGCCCAACTCCCTTGAATTCCACGTCTACAGTTTCTTATGCTAATGGCAGTGTTGAAGATGACAAGGACACCAACTGCAGTAATAGGTTGGTGTATAACGTACACAACACCTTGAAAGATAGCAGACTCAAATAA 1092 0.4203 MVKSSSEKNGVKKGPWTPEEDQKLIDYIQKHGQGKWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGSFSLEEEQAIIQLHSLLGNKWSSIASRLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHAPRFDLLQLSSILSSSLYTSLQLSYPTDPFGVSNAVNQNLLSLAAALLSSQYSNPDNTVVQSLECHVPNVSFPSQPVKNNTLQVNDRPNQLCGTTTTSISTPLNCETPFEKARLDQFSPAMANLSFQNSLPNLWQYSEGQSDQHSDCAANTVDDSAKLDSFIELLRSQISQPNQDTESFPTSFSSLLSSTATSSCPTPLNSTSTVSYANGSVEDDKDTNCSNRLVYNVHNTLKDSRLK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01327 363 FunFam MYB-related transcription factor 12 65 - -
Pte1g01327 363 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pte1g01327 363 Gene3D - 68 115 - -
Pte1g01327 363 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pte1g01327 363 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pte1g01327 363 CDD SANT 68 111 IPR001005 -
Pte1g01327 363 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pte1g01327 363 FunFam Transcription factor MYB39 68 129 - -
Pte1g01327 363 CDD SANT 15 60 IPR001005 -
Pte1g01327 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pte1g01327 363 Gene3D - 12 65 - -
Pte1g01327 363 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pte1g01327 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pte1g01327 363 SMART sant 65 113 IPR001005 -
Pte1g01327 363 SMART sant 12 62 IPR001005 -
Pte1g01327 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01327 Pte-Chr1 34610940 34612531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01327 7 145 MYB Transcription Factor Family AT4G21440 84.173 3.94e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01327 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01327 K09422 - qsu:112004686 333.569