Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01315 ATGGGAATTCAAGAGAAAGACCCCCTTGCTCAGTTGAGCTTACCACCTGGTTTCCGGTTTTACCCGACTGATGAAGAGCTTTTGGTCGATTACCTCTGTAGAAAAGTAGCGGGACAATTTTTCTCTCTGCCTATTATTGGAGAAATTGATTTGTATAAATTTAATCCATGGGTGTTACCAAGCAAAGCTATGTTTGGTGAGAAGGAATGGTATTTCTTTAGTCCGAGAGACAGGAAGTACCCAAATGGTTCAAGACCCAATAGAGTTGCTGGTTCTGGGTATTGGAAAGCAACTGGGACTGACAAAGTCATCACCACCGAAGGTCGGAAAGTTGGCATCAAGAAAGCTCTTGTTTTTTACGTAGGTAAAGCACCCAAAGGCACCAAAACCAATTGGATTATGCATGAGTATCGCCTCATTGATTCTTCACGGAAAAATGGTAGCGCCAAGTTGGATGAATGGGTTTTATGTCGGATTTATGAGAAGAACTCAAGCTCACAGAAAACGGTGCCTAGTGTTTCACTTTCGAGCAAAGAATACAGTCACGGCTCTTCTTCTCCATCTTCCTCACACTTGGACGATGTGTTGGAATCTTTGCCGGATATTGATGACCAATTCTTTAGCTTGCCTCGTATGAACTCGCTGAAGACACTACATCAGCAAGATGAGAAGCTCAATTTTCAAAGTCTGTGTACTGGGAATTACATTGACTGGACGAATCGGACGGGGATGAACACGGTGCCAGAACTGGTCCAGAGCACACAGGGCATGGGAAATTACCAAAGTAATCAGAGCAATTATAGTAACACCAACGATTTCTACGTGCCATCAATTCCACAGATGTGTCAAACGGAAGAGAAGGTTGAAAGTGTAGTGAGGAATAAGCATCAACATGGAGTTGAAAATTCTTCTGGGTTTATTCAGCAAAATTCGAACTTGTTATTTCAGGGTTTTTCGAGCTCACTCGACCCGTTTGGGTTCGGGTACAGACAATGA 996 0.4307 MGIQEKDPLAQLSLPPGFRFYPTDEELLVDYLCRKVAGQFFSLPIIGEIDLYKFNPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLIDSSRKNGSAKLDEWVLCRIYEKNSSSQKTVPSVSLSSKEYSHGSSSPSSSHLDDVLESLPDIDDQFFSLPRMNSLKTLHQQDEKLNFQSLCTGNYIDWTNRTGMNTVPELVQSTQGMGNYQSNQSNYSNTNDFYVPSIPQMCQTEEKVESVVRNKHQHGVENSSGFIQQNSNLLFQGFSSSLDPFGFGYRQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01315 331 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Pte1g01315 331 MobiDBLite consensus disorder prediction 168 193 - -
Pte1g01315 331 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pte1g01315 331 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Pte1g01315 331 MobiDBLite consensus disorder prediction 168 194 - -
Pte1g01315 331 FunFam NAC domain-containing protein 72-like 23 167 - -
Pte1g01315 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 257 - -
Pte1g01315 331 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01315 Pte-Chr1 34493620 34495285 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01315 1 260 NAC Transcription Factor Family AT4G27410 66.667 3.65e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte1g01315 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01315 - - pvy:116146142 454.136