Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01308 ATGGCTGGTACTAATTTCTCAGTTGCTTTACCCGAAGGGGAAGGGATTTGCTTTCACTGCAAGGAGAGAGCAACGCCCGTCAGAAAAGGCTGGCAGCTTCGAACTGGCGAATTCGCAAAGCTCTGTGACCGATGCAGTTCTGCTTACAGAAAGGGAATGTTTTGTGAAACGTTTCACCAAAACGTGGATGGTTGGAGGGGTTGTGTATCTTGTGGGAAGATGATACATTGTGGATGTATCATGTCAGCTCACTTGCTCGTGACATTAGATTATGGAGGGATGTGTTGTCTAGATTGCGGGAACAAAAATATCACTCAGGCAGAAATTAAGTATCTCTGCCAGACTGCTAGCCAAGATTTTTGGCAAAACTTCAGTCGAGAATTAGCCAACAAATCAAGCCCCAAATTAAACAAAGAGGTTGACTTTGACAAAATGATAGAAGGCCATTCTCCTCGCACTCTTGCAACTGAAGGTGACTCAAGGTCATCATTTCATTCTGTTATTAATCCTGAAAAAGCTATCCACCTTCATGATCAAAATTTTCAATCTGAAGCACCAGTTCCCGTAGCTCCTCCCTGTGGACAACTAAATACAGGTATTCAAAGATCTGAAGAGGCTTCATATCGACTGGAAAATGTAGGGAATTTGCTTCATATGGGCTGCACGGAGCTATCAGAAGCCCCAGGAGTCACAAATTCCACTCTTATTTCTTTGTTTGCAAAGATATTGACTGTTAGTGATGCTGATCTGAGGACTGCACGTCTGGTGATACCGAAGAGATACGCTGAGGCTTATTTCCCAAAAGCTTCTGAGCAGCAACGAGTTCCTGTTATTGTTGAGGACACACAAGGAAAAGATTGGAAATTTCACTTCCATTTTTGGGCCAATGGCAAAGGCAGGAGCAAAATGTATGTTTTAGAAGGTCTTAGAGATTACATGGCTACCATGCAGTGGCAGCCTGGTGACATAGTCGAGTTTTTCAGGAAAGAGCCAGAAGGGAAGATGGTAGTGGCAACGAAAAAGGGTTTTCTTCCAGCTGTTCAACCACCTTCGTAG 1056 0.4375 MAGTNFSVALPEGEGICFHCKERATPVRKGWQLRTGEFAKLCDRCSSAYRKGMFCETFHQNVDGWRGCVSCGKMIHCGCIMSAHLLVTLDYGGMCCLDCGNKNITQAEIKYLCQTASQDFWQNFSRELANKSSPKLNKEVDFDKMIEGHSPRTLATEGDSRSSFHSVINPEKAIHLHDQNFQSEAPVPVAPPCGQLNTGIQRSEEASYRLENVGNLLHMGCTELSEAPGVTNSTLISLFAKILTVSDADLRTARLVIPKRYAEAYFPKASEQQRVPVIVEDTQGKDWKFHFHFWANGKGRSKMYVLEGLRDYMATMQWQPGDIVEFFRKEPEGKMVVATKKGFLPAVQPPS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01308 351 SMART B3_2 239 342 IPR003340 GO:0003677
Pte1g01308 351 CDD B3_DNA 238 337 IPR003340 GO:0003677
Pte1g01308 351 Gene3D - 219 343 IPR015300 -
Pte1g01308 351 ProSiteProfiles B3 DNA-binding domain profile. 240 343 IPR003340 GO:0003677
Pte1g01308 351 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 16 341 - -
Pte1g01308 351 Pfam B3 DNA binding domain 239 337 IPR003340 GO:0003677
Pte1g01308 351 SUPERFAMILY DNA-binding pseudobarrel domain 237 337 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01308 Pte-Chr1 34389843 34395196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01308 28 342 B3 DNA Binding Superfamily AT4G32010 31.694 1.62e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte1g01308 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01308 - - qsa:O6P43_029042 282.722