Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01295 ATGGCTGATACAGGGTTGTATCACATGGAAGATGCAATTCTTCACCCAACTTCTTCATTTGAATACACTGTCACCCTTGACATTCCAACGGCTATCATATTCTGCGTAATCTTGGCTCTATTCTTCATCATCCTCTATTATATTCTCAGTGGATTACTTCAATGGCTGATGAAAGTACTGCCTAGTCAGAATGACCTAGAAGAAGGACACCTTCCTGGGTTTGTCTCAAGCTCTCATATTGCTGCATTTTTTCAGGTCATGGTCCGAAACAATCTGCAGGTGTTAAGAATATTGGAAACATTTACGAGGGATATAGAGGAAAGGCAAGGGAGTCCGTTTGGAGACATAGAGAAATCATCCCTACCATTAGTGAAATATGGAAGCCATGGTGTCAACAGTTGTGGCGCATGTGCCATTTGCTTGGAGGACTTCCATCTTGGGGAAGCTTGTCATGTTTTTCCAGGGTGCAATCATATTTTTCATTCCGATTGTATTGATGTCTGGTTGAAGAATAAGCTAACTTGTCCTGTTTGCCGATCTTCATTGTATAAGGATCCATGA 561 0.4153 MADTGLYHMEDAILHPTSSFEYTVTLDIPTAIIFCVILALFFIILYYILSGLLQWLMKVLPSQNDLEEGHLPGFVSSSHIAAFFQVMVRNNLQVLRILETFTRDIEERQGSPFGDIEKSSLPLVKYGSHGVNSCGACAICLEDFHLGEACHVFPGCNHIFHSDCIDVWLKNKLTCPVCRSSLYKDP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01295 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 184 IPR013083 -
Pte1g01295 186 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 182 IPR044675 -
Pte1g01295 186 SUPERFAMILY RING/U-box 136 184 - -
Pte1g01295 186 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Pte1g01295 186 Pfam Ring finger domain 136 179 IPR001841 -
Pte1g01295 186 SMART ring_2 137 178 IPR001841 -
Pte1g01295 186 CDD RING-H2_PA-TM-RING 137 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01295 Pte-Chr1 34213976 34214536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01295 107 182 C3H Transcription Factor Family AT1G53010 44.186 2.70e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01295 - - jre:109018137 162.155