Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01294 ATGGCACCACCCAGGCCACAACTAGGAAATTCATCCATTACACAATTTGATCTCAGCATTATGGATTCTCAATATCCTGTTTATTCATTTCCTTACTCTACTTGTTTTTCATGTCTTGTTGCTTTTGATTTTCTATTCTTAATATCAATCATCCTTGTATGCCTTCTCCTCCTTTCATTTGCTCTCTACTTCTACAAACTCATTCTAAATGACTTGCTCACATGGCTCCTCTATGGACCACCGGAGAGAAGCCGCGACTCAGGAGAAACAATCTCCCTATTCCGGAATATTGTTGCCCCATCCTTTCAGGCTGCAACATCATCACTACCTTCCACTCATGGCAACATGACATTGCTGCAAACATTTTCCATGGGGGTATTTGAAAGGCTTAGGGAGATGGAAGAACGTGAACGAAGAGAACAAGTATTTAAGATGCTGCCAGCTCCGGTGGAGTTCACAAGAGATGAGACATCAAGTTTAGATGGATGTGTTATATGCCTCGAGGATTTTCATGATGGTGAATCCTGTCGAACTTTTTCTCATTGTAGACACATATTTCATTTGAGTTGCATAGATAAATGGTTGAGTAATCATGTAACGTGTCCGATTTGCCGTGACTATGTCATAGATACTCCAGAAGTCTGA 645 0.4093 MAPPRPQLGNSSITQFDLSIMDSQYPVYSFPYSTCFSCLVAFDFLFLISIILVCLLLLSFALYFYKLILNDLLTWLLYGPPERSRDSGETISLFRNIVAPSFQAATSSLPSTHGNMTLLQTFSMGVFERLREMEERERREQVFKMLPAPVEFTRDETSSLDGCVICLEDFHDGESCRTFSHCRHIFHLSCIDKWLSNHVTCPICRDYVIDTPEV* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01294 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 209 IPR013083 -
Pte1g01294 214 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Pte1g01294 214 SMART ring_2 163 204 IPR001841 -
Pte1g01294 214 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 47 208 IPR044675 -
Pte1g01294 214 SUPERFAMILY RING/U-box 156 209 - -
Pte1g01294 214 Pfam Ring finger domain 163 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01294 Pte-Chr1 34198086 34198730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01294 131 213 C3H Transcription Factor Family AT1G53010 42.222 4.05e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01294 - K10664 qsu:112004174 98.9821