Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01277 ATGGATTTCAAAAGCATTGAGAAGAAGATAATACAGAAGGAGAAAGTAATCAATGATAGCATCATCGATGAACTAAATTATGATGATTTGAAGGAAGAGGAGAAACTTGTAGGTGATGGAAACCTAGACAAAAAATCAGCAATAGGGTGTAGCAAGAGAGGGTCCAATTCTGGGGGAGCTTCCCCACCTTCTTGTCAAGCTGAAAAATGTGGGGCTGATTTGACTTATGCAAAGAAATATCATCGTCGCCATAAAGTATGTGAGTTTCACTCCAAGGCACCTGTTGTGATGGTTTCTGGGCTAAGACAGAGGTTTTGCCAACAATGTAGCAGGTTCCACGAGATTGCAGAATTTGATGAATCAAAAAGGAGCTGCCGCAAGCGGCTGGCCAAGCACAATGAGCGGCGCCGTACTAGGCCGATGAGTGCTGCGGCAAAATTGCACCCGAGACTAGTTCCGATATATCAGGCGACAGCAGGCAGTATACATTCAGTTCAAAGACAGTCATGA 510 0.4431 MDFKSIEKKIIQKEKVINDSIIDELNYDDLKEEEKLVGDGNLDKKSAIGCSKRGSNSGGASPPSCQAEKCGADLTYAKKYHRRHKVCEFHSKAPVVMVSGLRQRFCQQCSRFHEIAEFDESKRSCRKRLAKHNERRRTRPMSAAAKLHPRLVPIYQATAGSIHSVQRQS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01277 169 SUPERFAMILY SBT domain 63 142 IPR036893 GO:0003677|GO:0005634
Pte1g01277 169 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 143 IPR044817 GO:0003677
Pte1g01277 169 FunFam Squamosa promoter-binding-like protein 14 56 126 - -
Pte1g01277 169 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Pte1g01277 169 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
Pte1g01277 169 Pfam SBP domain 65 138 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01277 Pte-Chr1 33994797 33995880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01277 52 137 SBP-box Gene Family AT2G33810 63.953 7.25e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte1g01277 SBP 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01277 - - qsa:O6P43_029124 180.644