Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01275 ATGGCTCCTCATAGGGAAAGGCCGACTTCTTCCACTCGACCTAACGACAAGGAGATCAGATATAGAGGTGTGAGGAAGCGTCCATGGGGAAGATACGCTGCTGAGATCCGTGATCCAGGGAAGAAGACGCGTGTCTGGCTTGGTACCTTCGATACCGCTGAGGAGGCGGCGCGTGCATACGACGATGCTGCTCGGGAGTTCCGTGGTGCTAAGGCTAAGACCAATTTTCCCATACCGACGGCGCTCCTCCTAAACCGTAATAACAGCCACAGCCCTAGCCAGAGCTACACCCTAGACTCTTCATCTTCTCCTCTGCCCACCACGCTTTCCCTCACCAAGACAGCTCACCCAGCCACCGCTGGTTCTGGTTTGGCTGTCATCCCGGAGTCTCGTTCTGTCATGTACTTCAACGCCTTGGCTCGTGCTGAGCCCTTAATGCATCTTGGGATGTGCAGGTTCGGTCGCCCTCGCCCTTTAGCAGACTTCCTTCATGTTGCGGGACGTGTTGGAATGAGTGGCGGCGGTCAGAGTGACTCAGTTTCATCCGCCATTGTCAATTGCGATAACGTATCATCAAAGAGACTGGTGGATCTGGATCTCAATCTCCCACCACCTACTGAGGTTGCTTAA 630 0.5444 MAPHRERPTSSTRPNDKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDDAAREFRGAKAKTNFPIPTALLLNRNNSHSPSQSYTLDSSSSPLPTTLSLTKTAHPATAGSGLAVIPESRSVMYFNALARAEPLMHLGMCRFGRPRPLADFLHVAGRVGMSGGGQSDSVSSAIVNCDNVSSKRLVDLDLNLPPPTEVA* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01275 209 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Pte1g01275 209 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Pte1g01275 209 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Pte1g01275 209 MobiDBLite consensus disorder prediction 85 110 - -
Pte1g01275 209 MobiDBLite consensus disorder prediction 1 22 - -
Pte1g01275 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 128 - -
Pte1g01275 209 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Pte1g01275 209 Coils Coil 53 73 - -
Pte1g01275 209 FunFam Ethylene-responsive transcription factor 2 20 78 - -
Pte1g01275 209 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Pte1g01275 209 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Pte1g01275 209 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Pte1g01275 209 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01275 Pte-Chr1 33971305 33972307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01275 9 176 AP2-EREBP Transcription Factor Family AT3G15210 51.613 5.93e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte1g01275 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01275 K09286 - qsa:O6P43_029132 192.586