Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01256 ATGCAATATAATGGTATGCATGGTCAACAGAATCTTGAATTATATTACTCCGGCATGCCTCGCCCGGGTACCAGCATGCTGCCCATGCCCCTGAATCATGGAGCCTGTGATCATTTTCCACCTTCAAACTTCTATGTTGGTGGTTTTATTGTTGATTCAGATAATTCTGGACGGGGCAGACACTTGGTGGAGGATGTCCAATGCCCATACAAAAGAAAAGTTGAAGGCAGTGCTGGGACTTTTCAATATTACAACACCTCTGCCAGTTCTAGTTCTTCTGTTGCTCCTCAGCATTTAAGACATCCGGATGGAATGGCCATAATGGACACAGCATCTTTTTCTCTGCCACAATATGGAGGAGGTAGCTCTGTTTCACCTATGGAAGTGGGATCTCATTCTAATGTTTGGGCTAGACCAGGGGATCCTTTCATCTTGCCAGACAATAATCATTTTATGCAAGGAAACTACTTGGGGCAATGCCTTCAGCCAACACCCGGTACCTGGTTTGACCAACAGTTAAGCTCTCATAATGATATTGATGGACTAAATGCAGCTTGGAATAATTTTCCAGTGCCATATATACAAGCAAACAATCCTAACAGAAGTTCTTTAGAAAGTGGGAATGTGGGTCTGCCAAGATATCATGAGACAATTATCAATAGTGCCGGCGGCCCCCGGTTTCTGACTCCTCCCCCTCCTCCTCCTCCCATCAACCCCAACTTCCATCATGGGTATCATATGCACGGTGGACGAGTCCAAAATGTGAACTTTCATCCTCACGTAGTCTCATCTTTATATGGAAATCCGATGTATGGAAGTACTGTTATTCCTGCACAGAATGGTTTTGAGATGGGTCCTCAACAGCTGGGTGCTCAACAGCTGAGGCCTGTACCTTCAGGTGGCGTTAGGATATATCATCCTCAAACAAATGGGGTCGTGCCTGAAACACATGTTGGACATCGCAATGTTGCGCACTTGAGACTTCTTCCGTCCGAAGAGGTAGCTACGCTAGAGCTGCAAGGCAACGATGAAGACGGTCAGCTGGTTGACCATCACAGTGATATGCGCCTGGACATAGATCATATGTCTTATGAGGAGCTTCTTGCATTAGGAGAGTGGATTGGCAATGTAAACACTGGTATGTCAGAGAAAACTATCTTGAGTAGACTGAAGACAAAAAACTACTTAGCACCTGCTGCTGCGGCTATTAATCTGGAGGAGGCAGCCAATGACGATCGGCAACCCGATTCTTGTATCATATGCCAGGAGGAGTATAAGAACGGAGAGAAGATTGGTGTTCTTGAATGTGGGCACCAGTACCATGTGAACTGCTTGAAGAAATGGTTGCTTGTGAAAAATGTCTGCCCTATATGCAAATCAGAAGCATTGAATAATGGGAAGAAGGATCGACATCATAAATAA 1422 0.4508 MQYNGMHGQQNLELYYSGMPRPGTSMLPMPLNHGACDHFPPSNFYVGGFIVDSDNSGRGRHLVEDVQCPYKRKVEGSAGTFQYYNTSASSSSSVAPQHLRHPDGMAIMDTASFSLPQYGGGSSVSPMEVGSHSNVWARPGDPFILPDNNHFMQGNYLGQCLQPTPGTWFDQQLSSHNDIDGLNAAWNNFPVPYIQANNPNRSSLESGNVGLPRYHETIINSAGGPRFLTPPPPPPPINPNFHHGYHMHGGRVQNVNFHPHVVSSLYGNPMYGSTVIPAQNGFEMGPQQLGAQQLRPVPSGGVRIYHPQTNGVVPETHVGHRNVAHLRLLPSEEVATLELQGNDEDGQLVDHHSDMRLDIDHMSYEELLALGEWIGNVNTGMSEKTILSRLKTKNYLAPAAAAINLEEAANDDRQPDSCIICQEEYKNGEKIGVLECGHQYHVNCLKKWLLVKNVCPICKSEALNNGKKDRHHK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01256 473 SUPERFAMILY RING/U-box 411 462 - -
Pte1g01256 473 CDD RING-H2_RNF24-like 416 462 - -
Pte1g01256 473 ProSiteProfiles Zinc finger RING-type profile. 418 459 IPR001841 -
Pte1g01256 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 463 IPR013083 -
Pte1g01256 473 SMART ring_2 418 458 IPR001841 -
Pte1g01256 473 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 82 463 IPR045191 GO:0061630
Pte1g01256 473 Pfam Ring finger domain 416 459 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01256 Pte-Chr1 33745107 33750166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01256 350 463 C3H Transcription Factor Family AT2G15530 49.123 5.52e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01256 K19041 - qsa:O6P43_001011 467.618