Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01226 ATGTCGTTGAGGAAGGTCTTTCGTTCCCGGAGGTTCTCCAGATCGTTCGAGGAGACGAGGGGTGTGGAGGAAGATCGGGGAAGGAACAAAGTTGCTAATGACGCGGAGGAGGATGAGTCGGCTGAGTCCGGGGTGTACGGGACGTCGTGGTCGTCGTTATTACCTGAGCTCCTTGGGGAGATAATTCAGCGAGTGGAGGTTAGCGAGGAGCGATGGCCTCAACGGCAAAACGTCGTCGCTTGCGCTTGTGTGTGCAAAAGATGGAGAGATTCGACAAAAGATATCGTGCGCTCTGCTGCTAACACCGGAAAAATTACTTTCCCTCCTTGTCTCAAACAGCCAGGACCTCGGGACATGCCAAGTCAGTGTCTCATTAAGAGGAACAAGAAGACCTCGACATATTACCTATATCTTGCTCTTTCACCTTCATTCGCAGACAAAGGGAAGTTTCTACTAGCGGCTAAAAGGATTAGATGTGGTTCTCACATAGAATACATCATATCCCTTGATGCTGATGACATATCTCAAGGAAGTAATGCATATGTTGGAAAGTTAAGGTCAGATTTTCTCGGTATCAACTTCACAATTTACGACAGCCAACCCCCTCATAGTGGTGCAAAGCCATCGAACTTCAAGTCTAGCAGGCGTTTTGCCTGCAAGCAGATAAGTCCCCAAGTTTCGGCAGGCAACTTTGAGGTTGGGCAGGTATCTTATAAGTTCAATCTCTTGAAGTCAAGAGGTCCCCGTAGGATGGTCTGCTCCATGAAGTGTGCAACACCTGGAGAAACATCTGATTCCGAATCCCTGAACAAGGATAAAATGAGCACAGCGGAACTTGCTAGCTCTGGGTATGCAATATTGAAGAACAAAGCCCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTAAATTTTCATGGTCGCGTAACTGTGGCATCAGTGAAGAATTTTCAACTGGCTGCTACTGTCGATCCAAGCCAGCCAGGCTGTAAAGGGGATGAGGAGACAGTCCTTCTCCAGTTTGGGAAAGTAGGCGATGATGTTTTCACCATGGACTACAGGCAGCCGCTATCGGCTTTCCAGGCCTTTGCAATATGTCTCACAAGCTTTGGCACGAAACTTGCATGTGAATAA 1134 0.4797 MSLRKVFRSRRFSRSFEETRGVEEDRGRNKVANDAEEDESAESGVYGTSWSSLLPELLGEIIQRVEVSEERWPQRQNVVACACVCKRWRDSTKDIVRSAANTGKITFPPCLKQPGPRDMPSQCLIKRNKKTSTYYLYLALSPSFADKGKFLLAAKRIRCGSHIEYIISLDADDISQGSNAYVGKLRSDFLGINFTIYDSQPPHSGAKPSNFKSSRRFACKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMVCSMKCATPGETSDSESLNKDKMSTAELASSGYAILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLAATVDPSQPGCKGDEETVLLQFGKVGDDVFTMDYRQPLSAFQAFAICLTSFGTKLACE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01226 377 CDD F-box_AtTLP-like 50 94 - -
Pte1g01226 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Pte1g01226 377 MobiDBLite consensus disorder prediction 18 46 - -
Pte1g01226 377 Gene3D Tubby Protein; Chain A 107 377 IPR025659 -
Pte1g01226 377 Pfam F-box domain 50 96 IPR001810 GO:0005515
Pte1g01226 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Pte1g01226 377 SUPERFAMILY Tubby C-terminal domain-like 102 377 IPR025659 -
Pte1g01226 377 PANTHER TUBBY-RELATED 23 375 - -
Pte1g01226 377 MobiDBLite consensus disorder prediction 18 37 - -
Pte1g01226 377 Gene3D - 44 97 - -
Pte1g01226 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Pte1g01226 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Pte1g01226 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Pte1g01226 377 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Pte1g01226 377 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Pte1g01226 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Pte1g01226 377 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Pte1g01226 377 Pfam Tub family 111 372 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01226 Pte-Chr1 33428276 33432042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01226 1 378 TUB Transcription Factor Family AT1G53320 69.689 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte1g01226 Tub 4.1e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01226 K19600 - qsa:O6P43_001049 600.897