Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01221 ATGAAGATGAGTGAGGGTGTTATCATTGGCCTTCTTGATTCAGGAATATGGCCAGAGTCTAAGATTTTCAACGACGAAGGAGTTGGGCCAATCCCCTCCAGGTGGAAGGGTGTTTGTGAAACAAGAGAATCATTTGACGGTGCAAAAAACTGCAACAGGAAAGTAGTTGGATCGCACTACTTCATCAAAGGTCTTCTAGCTGCGTATGGAAAGCCAATCCATACTATAGAAAATGGAGACTACTTGTCTCCTAGAGATGGCAGTGGGCATGGCACACACACTTCCTCAACTGCTACTGGATCGTTCTTAAGCAATGTTAGCTATAATGAACTAGATGTAGGAATATGTGCAGCACCTGACATTCTGAAAGCCTTTGATGAGGCAATACATGATGACATAGATGTTATATCTATGTCTATTGTCGTTGACCTTCCGGTGGAGTCAGAAGTTTTGAAATATTTCCGGGAATCACGTAATTTCTCGCGCTTCTTTATAATAACTTTCACGCGTCCCACGGTAGAACCACATTTGCCTGCAAATATAGACGAAAAGCAAAACGAAGAGAGCAATCAACTCAAAACTCAAAAACCTCTCTCAACAATGGCTGGGTACAGAGCCGAGGACGACTATGATTACCTCTTCAAAGTAGTGTTAATTGGTGATTCAGGTGTTGGAAAGTCCAATCTTCTCTCAAGATTCACTAAGAATGAGTTCAACCTTGAGTCCAAGTCCACCATTGGTGTTGAGTTTGCCACTCGTACTTTAACTGTTGATGGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGTCAGGAAAGGTACCGTGCAATCACAAGTGCATACTATCGGGGAGCTGTTGGTGCACTTCTCGTATATGATGTAACCCGCCATGCCACATTTGAGAACGTTGACAGATGGTTGAAAGAATTACGCAGCCACACTGATCACAACATCGTTGTTATGCTTGTGGGGAACAAGTCAGATCTTCGCCACCTTATAGCTGTATCAACTGAAGATGGCAAGTCCTATGCTGAAAAGGAATCTCTATACTTCATGGAAACCTCTGCCCTGGAAGCAACAAATGTGGAAAATGCATTTGCAGAAGTTCTCACTCAGATCTACCGAATTGCTAGCAAAAAGGCTCTTGAGGGAGGAGAAAATGGGAACGCTGCATCTGCCCCAGCCAAAGGAGAAAAAATAGACATAAAGAACGATGTGTCTGCTATGAAAAGAGTTGGTTGTTGCTCCAGCTAG 1257 0.432 MKMSEGVIIGLLDSGIWPESKIFNDEGVGPIPSRWKGVCETRESFDGAKNCNRKVVGSHYFIKGLLAAYGKPIHTIENGDYLSPRDGSGHGTHTSSTATGSFLSNVSYNELDVGICAAPDILKAFDEAIHDDIDVISMSIVVDLPVESEVLKYFRESRNFSRFFIITFTRPTVEPHLPANIDEKQNEESNQLKTQKPLSTMAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLTVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRSHTDHNIVVMLVGNKSDLRHLIAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIASKKALEGGENGNAASAPAKGEKIDIKNDVSAMKRVGCCSS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01221 418 SMART ras_sub_4 211 377 - -
Pte1g01221 418 SMART rho_sub_3 216 373 IPR001806 GO:0003924|GO:0005525
Pte1g01221 418 ProSiteProfiles small GTPase Rho family profile. 207 378 - -
Pte1g01221 418 SMART ran_sub_2 219 410 - -
Pte1g01221 418 FunFam ras-related protein RABA1f 206 416 - -
Pte1g01221 418 ProSiteProfiles small GTPase Rab1 family profile. 209 416 - -
Pte1g01221 418 Gene3D - 206 416 IPR027417 -
Pte1g01221 418 Gene3D Peptidase S8/S53 domain 6 114 IPR036852 GO:0004252|GO:0006508
Pte1g01221 418 SUPERFAMILY Subtilisin-like 6 143 IPR036852 GO:0004252|GO:0006508
Pte1g01221 418 CDD Rab11_like 211 375 - -
Pte1g01221 418 NCBIfam small GTP-binding protein domain 212 370 IPR005225 GO:0005525
Pte1g01221 418 ProSiteProfiles small GTPase Ras family profile. 199 410 IPR001806 GO:0003924|GO:0005525
Pte1g01221 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 377 IPR027417 -
Pte1g01221 418 PANTHER DRAB11-RELATED 207 401 - -
Pte1g01221 418 Pfam Ras family 215 375 IPR001806 GO:0003924|GO:0005525
Pte1g01221 418 PRINTS Transforming protein P21 ras signature 317 330 - -
Pte1g01221 418 PRINTS Transforming protein P21 ras signature 237 253 - -
Pte1g01221 418 PRINTS Transforming protein P21 ras signature 352 374 - -
Pte1g01221 418 PRINTS Transforming protein P21 ras signature 214 235 - -
Pte1g01221 418 PRINTS Transforming protein P21 ras signature 255 277 - -
Pte1g01221 418 SMART rab_sub_5 214 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01221 Pte-Chr1 33350871 33354786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01221 3 149 Subtilisin-like Serine Gene Family AT4G10520 47.305 3.76e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01221 K07904 - qsa:O6P43_029195 406.757