Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01186 ATGGCTGCGGTTGCTGATATTTCCGGTGATGCAGCGGCTGCCAAGAATTTGGACAAGTCCAAACCCGAATCAAAATTCAATGTGCAGAAGCTGGTTGATATGTTCACTAACTTGAACCCTTATGCTAAGGAGTTCGTCCCATCATCATACACTCACCATGAACATCAATCTCATCTCCACAATTTTGCTGTTGCTACTAAGCCTTCTGCTAATCATAACTACACAAATAACCGAAGGAGGAAAAATAACTATAATCAGGGGAGGAGGAGGTTGAATGGACGAGAATTGAGAGCTCAAAGAGAAGAGAGCATCAGAAGAACGGTGTATGTTTCAGACATTGATCAGCATGTCACGGAAGAGCGACTTGCTGCCTTGTTCAGTAGCTGTGGTCAGGTTGTTGACTGCCGAATTTGTGGTGATCCTCATTCAATTCTTCGATTTGCATTTGTGGAGTTCGCTGATGTCTTAGGTGCAAGAGCAGCTTTGAACCTTGGTGGAACAGTGCTTGGTTATTATCCACTAAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCAACATTTCTTCCCAGATCAGATGATGAGAGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGACAAAAAGCTTTCTCAAGCAGATGTGAATACCTTTTTCGAGGCAACTTGTGGTGAGGTTACTCGCTTGAGGCTTTTGGGGGATCATGTCCATTCAACTAGAATTGCTTTTGTGGAGTTTGCGATGGCAGAAAGTGCAATCCTCGCTCTGAGTTGTAGTGGCATGGTCTTGGGCACCCAACCAATAAGGGTAAGCCCATCTAAGACTCCTGTCAGGCCACGAATTGCATGCCCTCCGTTGCATTAA 876 0.4452 MAAVADISGDAAAAKNLDKSKPESKFNVQKLVDMFTNLNPYAKEFVPSSYTHHEHQSHLHNFAVATKPSANHNYTNNRRRKNNYNQGRRRLNGRELRAQREESIRRTVYVSDIDQHVTEERLAALFSSCGQVVDCRICGDPHSILRFAFVEFADVLGARAALNLGGTVLGYYPLRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKLSQADVNTFFEATCGEVTRLRLLGDHVHSTRIAFVEFAMAESAILALSCSGMVLGTQPIRVSPSKTPVRPRIACPPLH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01186 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 181 IPR000504 GO:0003723
Pte1g01186 291 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 34 284 - -
Pte1g01186 291 Gene3D - 49 182 IPR012677 -
Pte1g01186 291 Gene3D - 191 284 IPR012677 -
Pte1g01186 291 SUPERFAMILY RNA-binding domain, RBD 71 182 IPR035979 GO:0003676
Pte1g01186 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 171 IPR000504 GO:0003723
Pte1g01186 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Pte1g01186 291 CDD RRM1_CID8_like 104 183 IPR034823 -
Pte1g01186 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 279 IPR000504 GO:0003723
Pte1g01186 291 FunFam Polyadenylate-binding protein-interacting protein 11 71 183 - -
Pte1g01186 291 Pfam Ataxin-2 C-terminal region 34 49 IPR009818 -
Pte1g01186 291 CDD RRM2_CID8_like 199 280 IPR034825 -
Pte1g01186 291 SMART rrm1_1 204 275 IPR000504 GO:0003723
Pte1g01186 291 SMART rrm1_1 107 177 IPR000504 GO:0003723
Pte1g01186 291 SUPERFAMILY RNA-binding domain, RBD 193 283 IPR035979 GO:0003676
Pte1g01186 291 FunFam Polyadenylate-binding protein-interacting protein 10 197 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01186 Pte-Chr1 32855923 32860407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01186 90 275 Eukaryotic Initiation Factors Gene Family AT1G34140 25.381 2.95e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01186 - - qsa:O6P43_001153 471.47