Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01183 ATGGGAAAAGGGAGAGCACCATGTTGTGACAAGTCTAAAGTGAAGAAGGGTCCTTGGAGTCCTGCTGAAGACTTGAAGCTCATCACTTTCATTCAGCAACATGGCCATGATAACTGGAGGGCTCTCCCCAGACAAGCAGGAATTTTAAGATGTGGTAAAAGCTGTCGGTTGAGATGGATAAATTATCTGAGGCCCGATTTGAAAAGAGGGAATTTCACAAAAGAGGAAGAGGAGATGATCATTAGGCTGCATGCAGACCTTGGGAACAAATGGTCCATGATTGCATCCAATTTGCCTGGAAGGACAGACAATGAGATCAAGAATGTTTGGAACACCCATTTGAAGAAGCGAGTGATGACTTCAAGAAGTACAGAATCTGCGAGATATGAGTCCAAGGAATCCTCCATAACTTCGTACTCTGTGTCTTCTGCTGACTCTGCAAGCAACTCACAAAGCAAAGACCAGAGCACTTCTAATCATCAAGAACTCAAAAAACAAGCTTCCACAAAGGCAGCAGAGCAAGATTCACCGCAACAAGTTTCGAGTAAAAATGATGGGACAAAAATGGAGCTGAAGGAGTCATCAAGCTCAATGTCTTATCACTCTGATGTCACAAACACTACCAGCCAGTTTGATAACCACATGACAGTAACTTACAGTGGGGGTTACACAATGAATAATACAATAGAAGAAGTAAATAAACCAGATATCTCAGATTTTCACGATGTCATGGAAATCCCTTTGGAGTCAGATATTAATTTTTGGGCAATGTTAGAGAGCATAGGGTCCTGCCAGTCTGACGAGGTCCAGTTAGGTGACCTGACAGTCTTTCATCAACCCTCATACTTTGGAGAAAGCTTTGAACATGAAGAGGACAACAGAAAATGGGTGCAGTACTTGGAACATGAGTTAGGATTAGAAACTGTGTCAACTGAGGATGTAATTTAA 948 0.4219 MGKGRAPCCDKSKVKKGPWSPAEDLKLITFIQQHGHDNWRALPRQAGILRCGKSCRLRWINYLRPDLKRGNFTKEEEEMIIRLHADLGNKWSMIASNLPGRTDNEIKNVWNTHLKKRVMTSRSTESARYESKESSITSYSVSSADSASNSQSKDQSTSNHQELKKQASTKAAEQDSPQQVSSKNDGTKMELKESSSSMSYHSDVTNTTSQFDNHMTVTYSGGYTMNNTIEEVNKPDISDFHDVMEIPLESDINFWAMLESIGSCQSDEVQLGDLTVFHQPSYFGESFEHEEDNRKWVQYLEHELGLETVSTEDVI* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01183 315 MobiDBLite consensus disorder prediction 130 208 - -
Pte1g01183 315 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pte1g01183 315 Gene3D - 71 118 - -
Pte1g01183 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 209 - -
Pte1g01183 315 CDD SANT 71 114 IPR001005 -
Pte1g01183 315 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pte1g01183 315 CDD SANT 18 63 IPR001005 -
Pte1g01183 315 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pte1g01183 315 Gene3D - 15 68 - -
Pte1g01183 315 FunFam Transcription factor RAX3 9 69 - -
Pte1g01183 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pte1g01183 315 SMART sant 68 116 IPR001005 -
Pte1g01183 315 SMART sant 15 65 IPR001005 -
Pte1g01183 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pte1g01183 315 MobiDBLite consensus disorder prediction 120 208 - -
Pte1g01183 315 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pte1g01183 315 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01183 Pte-Chr1 32515946 32518448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01183 1 307 MYB Transcription Factor Family AT1G79180 42.274 2.06e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01183 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01183 K09422 - tcc:18594753 310.071