Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01180 ATGGATGGGAACTTGGCTGCAATGGCGGCCTTGCAGATGGCGGCTGCTAAAGATGTAGGTCGGGTCAAAGGGCCATGGAGCCCCCAAGAGGATGATTTGCTGCATAGTCTTGTGAACCGTTATGGACCTCGTAATTGGTCGGCTGTGAGCAAGTCGATTCCCGGTCGCTCCGGGAAGTCTTGTAGGCTCCGATGGTGTAACCAGCTGTCCCCTGAGGTAAAGCACCGACCTTTCACCTCTGAAGAGGACGATATCATCATCAAGGCGCATTCTGAGTACGGTAATAAATGGGCAACCATTGCTAGGCTCCTCCATGGCCGTACTGACAATGCTGTCAAGAACCATTGGAACTCTACCCTCAAGAGGAAGTTCTCTTCGTTCATGGCTGAGCATAATGGCAATGTCGCCGATGAAGAATCTTCCTTAAACCCAAAGAAAAGATTTACAGTTGGCGACGGGGGTCCTGCCTCGGCAAGTCGCAGCTTCAGTCCTAGCAGTCCTTCCGGATCCGATGTAAGCGATTCGAAGTTACCCGTGCTGTCAACTTCCCACCATAAACTGATTCCACCTGTAGGGTTAACAGGTGCGGTGGTAGCACTGCCTTCACAGACGATCGTGCGACCCCCAAGTCAAAAAAACACCAACAAACCAACGACAATTCTGACACTGGGTCTGCCTGAGACTGAGCGAACCGAGTTGCAGTTGGCGACTCGAATACCAAGTACCCAAAACACCATTCAGGCAAAAACAGCACTAATTCCATCTTGTAAGAAGTCAGTAATGGCGTCATTGGGGCCAGAGTTATTGTCTGTGATGAAGGAGATGATAAGGGAGGAGGTGCAAAGTTACATGGCCGATCAAGAAAAAAATGTTGCTGTAAGGTTCAACTGTGAAGGTTTGACAAATGCTGATGTAAAACGTATTGCATTACCAAATTCCAAAGCCTCCACACATCGCAGCATCACTCCACAGCTTCTGCATCTCCTCAACCCAGCAGAGAACAAGAAATTTCAGATTGGTATTGACCAAAAATTTGATTGGATTGACATTGAAAGTGTTGTTGATATGGTGACAGTGATTGCTGCTGACTTTGATGCGAAGATTGATGCTTTTGGTGGATTGAAGAATGGAACAAAAGTGGTGGAGTTGGATTGA 1155 0.4788 MDGNLAAMAALQMAAAKDVGRVKGPWSPQEDDLLHSLVNRYGPRNWSAVSKSIPGRSGKSCRLRWCNQLSPEVKHRPFTSEEDDIIIKAHSEYGNKWATIARLLHGRTDNAVKNHWNSTLKRKFSSFMAEHNGNVADEESSLNPKKRFTVGDGGPASASRSFSPSSPSGSDVSDSKLPVLSTSHHKLIPPVGLTGAVVALPSQTIVRPPSQKNTNKPTTILTLGLPETERTELQLATRIPSTQNTIQAKTALIPSCKKSVMASLGPELLSVMKEMIREEVQSYMADQEKNVAVRFNCEGLTNADVKRIALPNSKASTHRSITPQLLHLLNPAENKKFQIGIDQKFDWIDIESVVDMVTVIAADFDAKIDAFGGLKNGTKVVELD* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01180 384 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Pte1g01180 384 CDD SANT 77 120 IPR001005 -
Pte1g01180 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Pte1g01180 384 SMART sant 74 122 IPR001005 -
Pte1g01180 384 SMART sant 22 71 IPR001005 -
Pte1g01180 384 Gene3D - 22 74 - -
Pte1g01180 384 Gene3D - 76 147 - -
Pte1g01180 384 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pte1g01180 384 Pfam Myb-like DNA-binding domain 23 69 IPR001005 -
Pte1g01180 384 Pfam Myb-like DNA-binding domain 77 119 IPR001005 -
Pte1g01180 384 MobiDBLite consensus disorder prediction 135 177 - -
Pte1g01180 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Pte1g01180 384 FunFam MYB transcription factor 23 74 - -
Pte1g01180 384 ProSiteProfiles Myb-like domain profile. 18 69 IPR001005 -
Pte1g01180 384 CDD SANT 25 67 IPR001005 -
Pte1g01180 384 PANTHER MYB PROTEIN-RELATED 23 199 - -
Pte1g01180 384 MobiDBLite consensus disorder prediction 156 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01180 Pte-Chr1 32419818 32422357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01180 17 291 MYB Transcription Factor Family AT4G37260 48.322 1.18e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01180 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01180 K09422 - mnt:21409653 281.182