Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01172 ATGAAAGAAGGTGGCAGGAAGCAGGGTGTAATGTCACCATGTGCCGCATGCAAGCTTCTTCGAAGGAGATGTTCTCAAGATTGTATCTTTGCTCCTTATTTTCCAGCTGAGGAACCTCACAAGTTTGCCAGTGTTCACAAGGTATTTGGAGCCAGTAATGTCAACAAAATGTTGCAGGAACTACCTGAACACCAACGCAGTGATGCAGTTAGTTCCATGGTGTATGAGGCAAATGCTAGGGTAAGAGACCCTGTGTATGGTTGTGTTGGAGCCATATCATCTCTACAAAAGCAGGTTGATGTCCTCCAAAATGAATTGGCATTTGCACAAGCAGAGGTTGTGCAAATGAGAATGAGCCAATTCACATCATGCTCGGACCCTGCATCCGCCTGCTTAAATTCAACAGACAATGGTACCCCATCAGGAAGCAGGCTCATGTCTAATCTTCAGACCAGATCCTGTTTTTACATGGATATGGTCGTTGATCAAACTAACATGGATGAGTTTTTTTGGTCATGA 519 0.4432 MKEGGRKQGVMSPCAACKLLRRRCSQDCIFAPYFPAEEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQKQVDVLQNELAFAQAEVVQMRMSQFTSCSDPASACLNSTDNGTPSGSRLMSNLQTRSCFYMDMVVDQTNMDEFFWS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01172 172 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Pte1g01172 172 Coils Coil 92 119 - -
Pte1g01172 172 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pte1g01172 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01172 Pte-Chr1 32176687 32178814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01172 1 172 AS2 family AT1G31320 63.372 8.59e-67 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte1g01172 LOB 1.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01172 - - qsa:O6P43_001193 263.462