Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01170 ATGGGTTGGGCTCGCACGATAGAGAGTTCGAGAGCAGCCCGTCTTCCCAATCCTCATTCATCAGCAGGAAGCGGCAGCTCAAAGGCAGGAAATCAAGCGGAAATGGTGAAATTTCTGAAGCCCAACAAGGCAGTCATCGTCTTGCAAGGCCGTTTTGCTGGTCGCAAGGCTGTTATCGTTCGAAACTTCGACGATGGAAGCCGTGACCGTCCTTATGGGCACTGCCTCGTTGCTGGGGTTATGAAGTATCCATCTAAGGTCATTCGCAAGGACTCAGCCAAAAAGCAATCGAAGAAGTCAAGAGTGAAGGCATTCATTAAGGTTGTCAACAACACTCATGTAATGCCTACTAGGTATACACTTGATGTGGACCTTAAGGATGTTGTTACTGTGGATGCCCTTCAGTCAAGGGACAAGAAGATTACTGCTTGTAAGGAGACCAAGAAGAAGTTCGAGGAGAGGTTTAAGTGTGGGAAGAACAGGTGGTTCTTCACCAAGCTTAGGTTTTGA 510 0.4784 MGWARTIESSRAARLPNPHSSAGSGSSKAGNQAEMVKFLKPNKAVIVLQGRFAGRKAVIVRNFDDGSRDRPYGHCLVAGVMKYPSKVIRKDSAKKQSKKSRVKAFIKVVNNTHVMPTRYTLDVDLKDVVTVDALQSRDKKITACKETKKKFEERFKCGKNRWFFTKLRF* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01170 169 PANTHER 60S RIBOSOMAL PROTEIN L27 35 169 IPR001141 GO:0003735|GO:0005840|GO:0006412
Pte1g01170 169 SMART kow_9 38 65 IPR005824 -
Pte1g01170 169 ProSitePatterns Ribosomal protein L27e signature. 158 169 IPR018262 GO:0003735|GO:0005840|GO:0006412
Pte1g01170 169 SUPERFAMILY Translation proteins SH3-like domain 36 169 IPR008991 -
Pte1g01170 169 MobiDBLite consensus disorder prediction 13 30 - -
Pte1g01170 169 FunFam 60S ribosomal protein L27 35 169 - -
Pte1g01170 169 Pfam Ribosomal L27e protein family 86 169 IPR001141 GO:0003735|GO:0005840|GO:0006412
Pte1g01170 169 MobiDBLite consensus disorder prediction 1 30 - -
Pte1g01170 169 CDD KOW_RPL27 40 122 IPR041991 -
Pte1g01170 169 Gene3D - 35 169 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01170 Pte-Chr1 32049788 32051259 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01170 35 170 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 77.941 3.01e-76 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01170 K02901 - msin:131221008 223.016