Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01169 ATGGAACTCATCCAAAATCGAACCGATCCAACGGATCATATAGACCGACCATTTTTAAACGGTGCTATGCCTGCTGGCATGGCGAAACCCAGTCGTCCTCGTCGTTCACCAGGCTCTAAGTCAGGTTCTTCTTCTCGGTCAAGATCATACTCGCGTTCTGTTTCTCACTCCACCTCTCGTTCCCGCTCAATGACTCGATCCGACATTTCATCTACTCCATCCCGAAGTGTCAGTTCAAGTAGACGAAGCCGTAGTCGAAGCCGAAGACGAAGTCGAAGCCGAAGCCCGCTTCCCCAGAAAAAGAAGAGCCTTGCTGGCGTCACGAGGCGTGGTCGTTCTCCTCCATCTGAAACTAAAAGGACTTCCCCACCCCCAAGGAAGACATCTCCTGTTCGCGACTCACTTGTTCTTTATGTGGACAAACTCAGCAGGAATGTCAATGAAGGCCATCTTTCAGAAATATTCAGTACCTATGGGGAGGTGGTAAATGTGGAGATGGCAATGGATCGTAGAGTCAATCTTCCAAGAGGACATGCATATGTTGAATTCAAGACAAGAGCAGCTGCTGAGAAAGCTTTATTGTACATGGATGGTGCACAAATAGATGGGATTGTTATACACGCTATGTTCACTTTACCTCAAAGACCGAAGGTCTCACCACAACCTAAAGAAACTACCGTTTCTTCCAAGAAGGATGCCTCCAGGTGCGGTTATGCCAATGCAGATATTGAAAAAGATGAACCCAAGCGGCAAAGAGAGCCTTCACCTAGAAGAAAGCCTTTATCCTCACCTAGAAGGAGATCTCCCGGAACTCAAAGAAATGTATATCCAAGACGCCCCCTGGATTCTCCCCAACGACGTGAAGATTCTCCTGTCCGTCGAAGGATGGAATCTCCACATCGTCGTGGAGGGACACCTCCTCGGAGAAGGCCAGTATCTCCTGCTCGAAGACTCTCCCCACCATCAACAAGGCGTCTTAGATCGCCAGTGAGAGGCTCACCACGAAGGATGCGTGCTGGAAGTCTCAGTCGCAGGCGTTCACCCCCTCCTGCAAGGCGCCGGTCACCACTAAGAGGAGCTCAGAGTCCTCCTAGAAGATCTCCTATTGGTCGTAGACGTTCACCTAGTCGCAGGTCTGCACGATCGCTCTCAAGATCCTTTTCTCCACGAAGGCGACCGCCAGCCAGACGGGGAAGATCATCCTCTTCTGATTCACCAAGTCCTCGCAAGTTGGCAAGGAGGTCAAGTCCGAGTCCAAGGAGGCCATTGAGAGGGCGTCGCAGCAGCAGCAGCAGTTCTCCACCACCTTCTCGGAAGCCATAG 1323 0.511 MELIQNRTDPTDHIDRPFLNGAMPAGMAKPSRPRRSPGSKSGSSSRSRSYSRSVSHSTSRSRSMTRSDISSTPSRSVSSSRRSRSRSRRRSRSRSPLPQKKKSLAGVTRRGRSPPSETKRTSPPPRKTSPVRDSLVLYVDKLSRNVNEGHLSEIFSTYGEVVNVEMAMDRRVNLPRGHAYVEFKTRAAAEKALLYMDGAQIDGIVIHAMFTLPQRPKVSPQPKETTVSSKKDASRCGYANADIEKDEPKRQREPSPRRKPLSSPRRRSPGTQRNVYPRRPLDSPQRREDSPVRRRMESPHRRGGTPPRRRPVSPARRLSPPSTRRLRSPVRGSPRRMRAGSLSRRRSPPPARRRSPLRGAQSPPRRSPIGRRRSPSRRSARSLSRSFSPRRRPPARRGRSSSSDSPSPRKLARRSSPSPRRPLRGRRSSSSSSPPPSRKP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01169 440 CDD RRM_RNPS1 137 208 IPR034201 -
Pte1g01169 440 MobiDBLite consensus disorder prediction 422 440 - -
Pte1g01169 440 MobiDBLite consensus disorder prediction 1 133 - -
Pte1g01169 440 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 29 299 - -
Pte1g01169 440 MobiDBLite consensus disorder prediction 237 260 - -
Pte1g01169 440 MobiDBLite consensus disorder prediction 81 97 - -
Pte1g01169 440 SUPERFAMILY RNA-binding domain, RBD 128 218 IPR035979 GO:0003676
Pte1g01169 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 206 IPR000504 GO:0003723
Pte1g01169 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Pte1g01169 440 FunFam Serine/arginine-rich splicing factor SR45 67 220 - -
Pte1g01169 440 Gene3D - 28 221 IPR012677 -
Pte1g01169 440 MobiDBLite consensus disorder prediction 218 233 - -
Pte1g01169 440 MobiDBLite consensus disorder prediction 215 440 - -
Pte1g01169 440 MobiDBLite consensus disorder prediction 36 80 - -
Pte1g01169 440 MobiDBLite consensus disorder prediction 280 304 - -
Pte1g01169 440 MobiDBLite consensus disorder prediction 338 352 - -
Pte1g01169 440 SMART rrm1_1 136 209 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01169 Pte-Chr1 32038165 32043224 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01169 139 213 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 3.13e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01169 K14325 - gmx:100783566 296.204