Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01162 ATGGCGAAACCCAGTCGTCCTCGTCGTTCACCAGGCTCTAAGTCAGGTTCTTCTTCTCGGTCAAGATCATACTCGCGTTCTGTTTCTCACTCCACCTCTCGTTCCCGCTCAATGACTCGGTCTCCCTCTCTATCGCGCTCTAAGTCTGCTTCACGCTCCAGATCCGACATTTCTTCTTCTCCTTCCCGTAGTGTCAGTTCAAGGAGCCGAAGCCGTAGTCGAAGCCGAAGCCCGCTTCCCCAGAAAAAGAAGAGCCTTGCTGGCGTCACGAGGCGTGGTCGTTCTCCTCCATCTGAAACTAAAAGGACTTCCCCACCCCCAAGGAAGACATCTCCTGTTCGCGACTCACTTGTTCTTTATGTGGACAAACTCAGCAGGAATGTCAATGAAGGCCATCTTTCAGAAATATTCAGTACCTATGGGGAGGTGGTAAATGTGGAGATGGCAATGGATCGTAGAGTCAATCTTCCAAGAGGACATGCATATGTTGAATTCAAGACAAGAGCAGCTGCTGAGAAAGCTTTATTGTACATGGATGGTGCACAAATAGATGGGATTGTTATACACGCTATGTTCACTTTACCTCAAAGACCGAAGGTCTCACCACAACCTAAAGAAACTACCGTTTCTTCCAAGAAGGATGCCTCCAGGTGCGGTTATGCCAATGCAGATATTGAAAAAGATGAACCCAAGCGGCAAAGAGAGCCTTCACCTAGAAGAAAGCCTTTATCCTCACCTAGAAGGAGATCTCCCGGAACTCAAAGAAATGTATATCCAAGACGCCCCCTGGATTCTCCCCAACGACGTGAAGATTCTCCTGTCCGTCGAAGGATGGAATCTCCACATCGTCGTGGAGGGACACCTCCTCGGAGAAGGCCAGTATCTCCTGCTCGAAGACTCTCCCCATCATCAACAAGGCTTCTTAGATCGCCAATGAGAGGCTCACCACGAAGGATGCGTGCTGGAAGTCTCAGTCGCAGGCGTTCACCCCCTCCTGCAAGGCGCCGGTCACCACTAAGAGGAGCTCAGAGTCCTCCTAGAAGATCTCCTATTGGTCGTAGACGTTCACCTAGTCGCAGGTCTGCACGATCGCTCTCAAGATCCTTTTCTCCACGAAGGCGACCGCCAGCCAGACGGGGAAGATCATCCTCTTCTTCTGATTCACCAAGTCCTCGCAAGTTGGCGAGGAGGTCAAGTCCGAGTCCAAGGAGGCCATTGAGAGGGCGTCGCAGCAGCAGCAGCAGTTCTCCACCACCTTCTCGGAAGCCATAG 1272 0.5149 MAKPSRPRRSPGSKSGSSSRSRSYSRSVSHSTSRSRSMTRSPSLSRSKSASRSRSDISSSPSRSVSSRSRSRSRSRSPLPQKKKSLAGVTRRGRSPPSETKRTSPPPRKTSPVRDSLVLYVDKLSRNVNEGHLSEIFSTYGEVVNVEMAMDRRVNLPRGHAYVEFKTRAAAEKALLYMDGAQIDGIVIHAMFTLPQRPKVSPQPKETTVSSKKDASRCGYANADIEKDEPKRQREPSPRRKPLSSPRRRSPGTQRNVYPRRPLDSPQRREDSPVRRRMESPHRRGGTPPRRRPVSPARRLSPSSTRLLRSPMRGSPRRMRAGSLSRRRSPPPARRRSPLRGAQSPPRRSPIGRRRSPSRRSARSLSRSFSPRRRPPARRGRSSSSSDSPSPRKLARRSSPSPRRPLRGRRSSSSSSPPPSRKP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01162 423 MobiDBLite consensus disorder prediction 200 215 - -
Pte1g01162 423 SMART rrm1_1 118 191 IPR000504 GO:0003723
Pte1g01162 423 MobiDBLite consensus disorder prediction 320 334 - -
Pte1g01162 423 MobiDBLite consensus disorder prediction 262 286 - -
Pte1g01162 423 CDD RRM_RNPS1 119 190 IPR034201 -
Pte1g01162 423 SUPERFAMILY RNA-binding domain, RBD 110 200 IPR035979 GO:0003676
Pte1g01162 423 MobiDBLite consensus disorder prediction 219 242 - -
Pte1g01162 423 MobiDBLite consensus disorder prediction 381 395 - -
Pte1g01162 423 MobiDBLite consensus disorder prediction 197 423 - -
Pte1g01162 423 Gene3D - 3 206 IPR012677 -
Pte1g01162 423 MobiDBLite consensus disorder prediction 1 114 - -
Pte1g01162 423 MobiDBLite consensus disorder prediction 405 423 - -
Pte1g01162 423 FunFam Serine/arginine-rich splicing factor SR45 43 202 - -
Pte1g01162 423 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 4 281 - -
Pte1g01162 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Pte1g01162 423 MobiDBLite consensus disorder prediction 10 74 - -
Pte1g01162 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01162 Pte-Chr1 31919261 31925434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01162 121 195 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 3.74e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01162 K14325 - gmx:100783566 287.345