Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01102 ATGGGTCCACCTGGTGTCACAACCAGACTCACCAGTGGTTACTCATCAGCTGTAGCACCAACATCTGCTTCGACAACACCTCTTTTTGCGAGTGCTCAAACTACTTGGCCGTCTTCCCTGGTTGCTGGTTCAGGTGTTGGTTCTTCTACGCTAGATTCCATTCTTGCAGGCATCAAGCGTTCTTCCGAATCATTCTACTATCCAACTGTTTTGGGTGCCCACAATATGATTGGGTTAAGTGAAGCTTGGTACTCTACAAATTCATTAACCAAGCGACCTAGGTACGAGAGTACAAGCCATTTGCCTATATACCCACAGAGGCCTGGGGAGAAGGATTGTGCTTACTATATGCAAACAAGAACATGTAAATTTGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATTCCAGATTGGAAAGAGGTTCCTGTAATTACAAGTGATTCCTTTCCTGTGAGGCCTGGAGAACCAGATTGTCCTTACTTCATTAAAACCCAAACATGCAGGTTTGGTTCAAAATGCAAATTTAACCATCCAAGAGATAAAATGATTACTCCGGACGATTCTCAAATTGCATCTGTCTTACCGGAGCGGCCGTCTGAGCCCCCTTGTGCGTTTTACATGAAGACTGGTATATGTAAATTTGGTGCTTCCTGCAAATTCCACCACCCAAAAGATTTACAAATTCAGTTGGCTGGGCAAGCAAATGGCAGTGATGAACAAACTCAGTCAAATATTATGAATGATGGAGTAACTGCAGGTGCTCAGCTGGTTTCACATCAAGCATCCAATGTGCCTGCGTCAATACTTAACAGCAAAGGACTTCCTATAAGACTGGGTGAAGTTGATTGTCCATTCTACTTGAAAACTGGAAGTTGCAAGTATGGCGCCACGTGTCGCTACAATCATCCTGATAGGACTGCAATTAATCCAGCTTTAGCTGCAATAGGCGCCCAAATTCTGGGATCTCCTGCAGACCTCAGTTTTGGTGTTGTTACTCCAGCTGCTTCACTTTATCAAACTATTGATACCAGATTATCTCATTCAACGGTGGGAGCATTAACATCCGTTTATCCACAAAGACCTGGACAGACCGAATGTGAATACTACATGAAAACAGGAACATGCATGTTTGGAGAAAGGTGCAAGTTCCATCATCCTGTCGACCGAACAGCACTATCAACACAAGGTGTCACACTCACACCTGCAGGACTACCTAGAAGAGAGGGTTCCATTATGTGTCCGTACTACTTAAAAACTGGAACTTGCAAATTTGGAGCAACCTGCAAGTTTGACCACCCACCACCTGCAGAAGTTATGACCTTGTCATCCCTAGGCACATCTACAAATCCTGGTGAAGCAAAAAATGGGGACGAAGGCGCCTGA 1401 0.4461 MGPPGVTTRLTSGYSSAVAPTSASTTPLFASAQTTWPSSLVAGSGVGSSTLDSILAGIKRSSESFYYPTVLGAHNMIGLSEAWYSTNSLTKRPRYESTSHLPIYPQRPGEKDCAYYMQTRTCKFGESCKFDHPIWVPEGGIPDWKEVPVITSDSFPVRPGEPDCPYFIKTQTCRFGSKCKFNHPRDKMITPDDSQIASVLPERPSEPPCAFYMKTGICKFGASCKFHHPKDLQIQLAGQANGSDEQTQSNIMNDGVTAGAQLVSHQASNVPASILNSKGLPIRLGEVDCPFYLKTGSCKYGATCRYNHPDRTAINPALAAIGAQILGSPADLSFGVVTPAASLYQTIDTRLSHSTVGALTSVYPQRPGQTECEYYMKTGTCMFGERCKFHHPVDRTALSTQGVTLTPAGLPRREGSIMCPYYLKTGTCKFGATCKFDHPPPAEVMTLSSLGTSTNPGEAKNGDEGA* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01102 466 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Pte1g01102 466 SMART c3hfinal6 107 134 IPR000571 GO:0046872
Pte1g01102 466 SMART c3hfinal6 158 185 IPR000571 GO:0046872
Pte1g01102 466 SMART c3hfinal6 366 393 IPR000571 GO:0046872
Pte1g01102 466 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Pte1g01102 466 SMART c3hfinal6 413 440 IPR000571 GO:0046872
Pte1g01102 466 ProSiteProfiles Zinc finger C3H1-type profile. 107 135 IPR000571 GO:0046872
Pte1g01102 466 Gene3D - 364 452 - -
Pte1g01102 466 Gene3D - 158 241 - -
Pte1g01102 466 SUPERFAMILY CCCH zinc finger 287 310 IPR036855 GO:0046872
Pte1g01102 466 MobiDBLite consensus disorder prediction 1 20 - -
Pte1g01102 466 SUPERFAMILY CCCH zinc finger 368 395 IPR036855 GO:0046872
Pte1g01102 466 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Pte1g01102 466 MobiDBLite consensus disorder prediction 447 466 - -
Pte1g01102 466 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
Pte1g01102 466 SUPERFAMILY CCCH zinc finger 163 187 IPR036855 GO:0046872
Pte1g01102 466 SUPERFAMILY CCCH zinc finger 206 231 IPR036855 GO:0046872
Pte1g01102 466 SUPERFAMILY CCCH zinc finger 108 134 IPR036855 GO:0046872
Pte1g01102 466 ProSiteProfiles Zinc finger C3H1-type profile. 366 394 IPR000571 GO:0046872
Pte1g01102 466 FunFam Zinc finger CCCH domain-containing protein 37 63 144 - -
Pte1g01102 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 309 IPR000571 GO:0046872
Pte1g01102 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 185 IPR000571 GO:0046872
Pte1g01102 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 419 440 IPR000571 GO:0046872
Pte1g01102 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 109 133 IPR000571 GO:0046872
Pte1g01102 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 230 IPR000571 GO:0046872
Pte1g01102 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 368 392 IPR000571 GO:0046872
Pte1g01102 466 ProSiteProfiles Zinc finger C3H1-type profile. 158 186 IPR000571 GO:0046872
Pte1g01102 466 ProSiteProfiles Zinc finger C3H1-type profile. 413 441 IPR000571 GO:0046872
Pte1g01102 466 SUPERFAMILY CCCH zinc finger 416 440 IPR036855 GO:0046872
Pte1g01102 466 PANTHER PROTEIN PHOSPHATASE RELATED 153 322 - -
Pte1g01102 466 FunFam zinc finger CCCH domain-containing protein 37 364 453 - -
Pte1g01102 466 Gene3D - 243 317 - -
Pte1g01102 466 Gene3D - 72 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01102 Pte-Chr1 29703475 29712941 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01102 104 438 C2H2 Transcription Factor Family AT5G18550 32.958 8.64e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte1g01102 zf-CCCH 2.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01102 - - qsa:O6P43_029441 623.239