Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g01102 | ATGGGTCCACCTGGTGTCACAACCAGACTCACCAGTGGTTACTCATCAGCTGTAGCACCAACATCTGCTTCGACAACACCTCTTTTTGCGAGTGCTCAAACTACTTGGCCGTCTTCCCTGGTTGCTGGTTCAGGTGTTGGTTCTTCTACGCTAGATTCCATTCTTGCAGGCATCAAGCGTTCTTCCGAATCATTCTACTATCCAACTGTTTTGGGTGCCCACAATATGATTGGGTTAAGTGAAGCTTGGTACTCTACAAATTCATTAACCAAGCGACCTAGGTACGAGAGTACAAGCCATTTGCCTATATACCCACAGAGGCCTGGGGAGAAGGATTGTGCTTACTATATGCAAACAAGAACATGTAAATTTGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATTCCAGATTGGAAAGAGGTTCCTGTAATTACAAGTGATTCCTTTCCTGTGAGGCCTGGAGAACCAGATTGTCCTTACTTCATTAAAACCCAAACATGCAGGTTTGGTTCAAAATGCAAATTTAACCATCCAAGAGATAAAATGATTACTCCGGACGATTCTCAAATTGCATCTGTCTTACCGGAGCGGCCGTCTGAGCCCCCTTGTGCGTTTTACATGAAGACTGGTATATGTAAATTTGGTGCTTCCTGCAAATTCCACCACCCAAAAGATTTACAAATTCAGTTGGCTGGGCAAGCAAATGGCAGTGATGAACAAACTCAGTCAAATATTATGAATGATGGAGTAACTGCAGGTGCTCAGCTGGTTTCACATCAAGCATCCAATGTGCCTGCGTCAATACTTAACAGCAAAGGACTTCCTATAAGACTGGGTGAAGTTGATTGTCCATTCTACTTGAAAACTGGAAGTTGCAAGTATGGCGCCACGTGTCGCTACAATCATCCTGATAGGACTGCAATTAATCCAGCTTTAGCTGCAATAGGCGCCCAAATTCTGGGATCTCCTGCAGACCTCAGTTTTGGTGTTGTTACTCCAGCTGCTTCACTTTATCAAACTATTGATACCAGATTATCTCATTCAACGGTGGGAGCATTAACATCCGTTTATCCACAAAGACCTGGACAGACCGAATGTGAATACTACATGAAAACAGGAACATGCATGTTTGGAGAAAGGTGCAAGTTCCATCATCCTGTCGACCGAACAGCACTATCAACACAAGGTGTCACACTCACACCTGCAGGACTACCTAGAAGAGAGGGTTCCATTATGTGTCCGTACTACTTAAAAACTGGAACTTGCAAATTTGGAGCAACCTGCAAGTTTGACCACCCACCACCTGCAGAAGTTATGACCTTGTCATCCCTAGGCACATCTACAAATCCTGGTGAAGCAAAAAATGGGGACGAAGGCGCCTGA | 1401 | 0.4461 | MGPPGVTTRLTSGYSSAVAPTSASTTPLFASAQTTWPSSLVAGSGVGSSTLDSILAGIKRSSESFYYPTVLGAHNMIGLSEAWYSTNSLTKRPRYESTSHLPIYPQRPGEKDCAYYMQTRTCKFGESCKFDHPIWVPEGGIPDWKEVPVITSDSFPVRPGEPDCPYFIKTQTCRFGSKCKFNHPRDKMITPDDSQIASVLPERPSEPPCAFYMKTGICKFGASCKFHHPKDLQIQLAGQANGSDEQTQSNIMNDGVTAGAQLVSHQASNVPASILNSKGLPIRLGEVDCPFYLKTGSCKYGATCRYNHPDRTAINPALAAIGAQILGSPADLSFGVVTPAASLYQTIDTRLSHSTVGALTSVYPQRPGQTECEYYMKTGTCMFGERCKFHHPVDRTALSTQGVTLTPAGLPRREGSIMCPYYLKTGTCKFGATCKFDHPPPAEVMTLSSLGTSTNPGEAKNGDEGA* | 467 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g01102 | 466 | SMART | c3hfinal6 | 203 | 230 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | SMART | c3hfinal6 | 107 | 134 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | SMART | c3hfinal6 | 158 | 185 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | SMART | c3hfinal6 | 366 | 393 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | SMART | c3hfinal6 | 283 | 310 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | SMART | c3hfinal6 | 413 | 440 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | ProSiteProfiles | Zinc finger C3H1-type profile. | 107 | 135 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | Gene3D | - | 364 | 452 | - | - | |
Pte1g01102 | 466 | Gene3D | - | 158 | 241 | - | - | |
Pte1g01102 | 466 | SUPERFAMILY | CCCH zinc finger | 287 | 310 | IPR036855 | GO:0046872 | |
Pte1g01102 | 466 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Pte1g01102 | 466 | SUPERFAMILY | CCCH zinc finger | 368 | 395 | IPR036855 | GO:0046872 | |
Pte1g01102 | 466 | ProSiteProfiles | Zinc finger C3H1-type profile. | 203 | 231 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | MobiDBLite | consensus disorder prediction | 447 | 466 | - | - | |
Pte1g01102 | 466 | ProSiteProfiles | Zinc finger C3H1-type profile. | 283 | 311 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | SUPERFAMILY | CCCH zinc finger | 163 | 187 | IPR036855 | GO:0046872 | |
Pte1g01102 | 466 | SUPERFAMILY | CCCH zinc finger | 206 | 231 | IPR036855 | GO:0046872 | |
Pte1g01102 | 466 | SUPERFAMILY | CCCH zinc finger | 108 | 134 | IPR036855 | GO:0046872 | |
Pte1g01102 | 466 | ProSiteProfiles | Zinc finger C3H1-type profile. | 366 | 394 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | FunFam | Zinc finger CCCH domain-containing protein 37 | 63 | 144 | - | - | |
Pte1g01102 | 466 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 286 | 309 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 160 | 185 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 419 | 440 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 109 | 133 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 206 | 230 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 368 | 392 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | ProSiteProfiles | Zinc finger C3H1-type profile. | 158 | 186 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | ProSiteProfiles | Zinc finger C3H1-type profile. | 413 | 441 | IPR000571 | GO:0046872 | |
Pte1g01102 | 466 | SUPERFAMILY | CCCH zinc finger | 416 | 440 | IPR036855 | GO:0046872 | |
Pte1g01102 | 466 | PANTHER | PROTEIN PHOSPHATASE RELATED | 153 | 322 | - | - | |
Pte1g01102 | 466 | FunFam | zinc finger CCCH domain-containing protein 37 | 364 | 453 | - | - | |
Pte1g01102 | 466 | Gene3D | - | 243 | 317 | - | - | |
Pte1g01102 | 466 | Gene3D | - | 72 | 146 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g01102 | Pte-Chr1 | 29703475 | 29712941 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g01102 | 104 | 438 | C2H2 Transcription Factor Family | AT5G18550 | 32.958 | 8.64e-54 | 185 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pte1g01102 | zf-CCCH | 2.6e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g01102 | - | - | qsa:O6P43_029441 | 623.239 |