Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01096 ATGGAGATTGACTTGAACCAAGAGCCTTTTGATCAAGCGCGTAGGTCGGTTATGAGGTTTGACTCCATTTTAAGCGAAATAGAATCAACAAATGGGCGCATTGAAGAACGTATCAGGCACCTGGAAGCAGTGACAGCAAGGGCCAGGCAGCGCCAAAGGTGGAGGCATGGTCAAACTTCACTTCACATAACTAATGTCACCACAAGGCTTGAAGCTGCTAATAACCAAGATGAAGACAATGCTGACCATGAAGTTGTTAATTTTATCTCTGAAGAAGGAACGACTAGGCCTGATAAATCTGACAAAAGGGACGGTACTTATCCAATAGCTAAAGAATTGGAGATAGGTACTGATAATACAGGAAGCGATGCTGGAGGGTTTTTTGATTGTAATATTTGCCTTGACATGGCTAGAGATCCAATATTGACTTGTTGTGGTCATTTGTTTTGTTGGGCATGCTTCTATCAGTTGTTATATGCTTATTCTAATGCAAAGGAATGTCCAGTATGTCGAGGAGAGGTAACTGATTCAAGCATCACTCCAATTTATGGCAATGGGAATGTCACTGTTAGCCCAGGTTGCAGACCAAAAGACAAAGCTAAAACTATACCTCCTCGGCCTCGTGCACAAAGAATTGAGAGTATGAGACAGCAGCTTGTACGGCAGCAATCAATTCCTATACCAATTGAGGAAAGGTTTCAGCGCTTTAGCCACATGATTGGTGCAATGAGAGAGCGGGTTCGACTAGAAAGCCCTCAAAATGCTGCTCAAAGAAATAATTCTCTATCTAATTCACATAGTTCTTCCCGCCATTTATTGCTTGCAGAAATTGAGAACCAGCAGATTCATGCCCCGCATTTTTCAACATTATTATTGGAAGGGGCTGCTTCATTTTCTTCCGTACCATCAGCCTTAATTTCAGCGTTGGATTCTGCAGAGAGGTTAGCTGAGGACCTTGCATCTTATATCCATGGTCACGAGAATGGGAGAAACAACAATTATTCTCCCCTAGCTGTCAATGGAGAATCGCTTTCAAGCACATCTACTATTCAACGATCAGAAGATGCTGCTATAGAAATTTATTTTGAAGACCTGCCTTTTCAATCTTCTGTTTTCACAAACACCAGGGAGGCCACGTTAATAAGCACAGAAACACAAAATACAGGCGTTTCTGGTCAAATGAATACAACAATGTATCCTAATCCTTCCACTTCAAGTGCAAGAGGTAACCTTTTAAGAGTTTCAGATGCTGAAAATGGAGTTTCACGTGATTCCAGAAGGAGAAGATTGAACTAA 1296 0.4167 MEIDLNQEPFDQARRSVMRFDSILSEIESTNGRIEERIRHLEAVTARARQRQRWRHGQTSLHITNVTTRLEAANNQDEDNADHEVVNFISEEGTTRPDKSDKRDGTYPIAKELEIGTDNTGSDAGGFFDCNICLDMARDPILTCCGHLFCWACFYQLLYAYSNAKECPVCRGEVTDSSITPIYGNGNVTVSPGCRPKDKAKTIPPRPRAQRIESMRQQLVRQQSIPIPIEERFQRFSHMIGAMRERVRLESPQNAAQRNNSLSNSHSSSRHLLLAEIENQQIHAPHFSTLLLEGAASFSSVPSALISALDSAERLAEDLASYIHGHENGRNNNYSPLAVNGESLSSTSTIQRSEDAAIEIYFEDLPFQSSVFTNTREATLISTETQNTGVSGQMNTTMYPNPSTSSARGNLLRVSDAENGVSRDSRRRRLN* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01096 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 81 282 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte1g01096 431 MobiDBLite consensus disorder prediction 388 412 - -
Pte1g01096 431 MobiDBLite consensus disorder prediction 388 431 - -
Pte1g01096 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 227 IPR013083 -
Pte1g01096 431 SUPERFAMILY RING/U-box 124 180 - -
Pte1g01096 431 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Pte1g01096 431 Pfam Zinc finger, C3HC4 type (RING finger) 130 176 - -
Pte1g01096 431 SMART ring_2 130 170 IPR001841 -
Pte1g01096 431 Coils Coil 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01096 Pte-Chr1 29269929 29272516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01096 120 360 C3H Transcription Factor Family AT3G58030 37.324 5.60e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01096 - - qsa:O6P43_029476 362.844