Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01093 ATGGAAACCCCTCCTCATGAAACATCCAACAACACAGGATTGTCCTTCTCCACAACCTTGTCAATTGGTCCAGTTGGTGCAGCAGTTAAACACGTTGAAGAAGACAACCCCAGAAAAGTTAACCACAGCGATGAAAGTGAAGATATGAACGGACATGGTGACAGTCTATCTCCAAAACCCAATCTGTTGTCTCTTCAGCTTGACCTTTTTCCACGCACACCTGCAGTCCCTCGTACTAGTAACCTGCCCCTTTCTTTCACTTCGCCTCCATCAACTGAAAATGTTGAACAAGAAGAAGGGGAGGAAGGGCCTGCAGTGTCATCATCTCCAAACAACAGTGCTGCCTCTTCGTTGCAAATGGATCTGTGTATATATAGCAAAGGGCTGAACCAATACGGCAAGAGGGGATCAAGTGGTGAAGGATGTGATCAGAGGGCTTCTTCTAGAGCTAGTGACGAAGATGACAACAACAGTGTTACGAGGAAGAAGCTCAGGCTGTCCAAAGAACAGTCTGCTTTTCTTGAAGAAAGTTTCAAAGAACATAGTACTCTTAACCCTAAACAGAAGCTTGCTCTTGCAAAACAACTCGGTCTTCGTCCCCGGCAGGTAGAAGTTTGGTTTCAGAACAGGCGAGCTAGGACGAAGCTGAAGCAGACAGAGGTGGACTGTGAATACTTGAAAAGGTGTTGCGAGACATTGACAGAAGAGAACAGAAGGCTTCATAAAGAGCTTCAAGAGTTAAGAGCTTTAAAGATTTCAAACCCATTCTACATGCAATTACCAGCAACAACTCTCACCATGTGCCCCTCTTGTGAGCGGGTAGCAACTAATTCAACTTCTGCAGCTTCCTCTAATACACCTCCATCTACCACACATTCCAATGGGCCAAGCAGTACTACTGCCACTAACAAAACCAATGACCCCATTTCCAACTCCAACATTGCGTTCCCTATCAATAGACCCAAGTTCTATCCATTTGCTCACTCCTAA 990 0.4535 METPPHETSNNTGLSFSTTLSIGPVGAAVKHVEEDNPRKVNHSDESEDMNGHGDSLSPKPNLLSLQLDLFPRTPAVPRTSNLPLSFTSPPSTENVEQEEGEEGPAVSSSPNNSAASSLQMDLCIYSKGLNQYGKRGSSGEGCDQRASSRASDEDDNNSVTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKISNPFYMQLPATTLTMCPSCERVATNSTSAASSNTPPSTTHSNGPSSTTATNKTNDPISNSNIAFPINRPKFYPFAHS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01093 329 CDD bZIP 208 249 - -
Pte1g01093 329 MobiDBLite consensus disorder prediction 1 20 - -
Pte1g01093 329 MobiDBLite consensus disorder prediction 278 314 - -
Pte1g01093 329 FunFam Homeobox-leucine zipper protein 18 146 222 - -
Pte1g01093 329 Coils Coil 230 250 - -
Pte1g01093 329 MobiDBLite consensus disorder prediction 25 61 - -
Pte1g01093 329 MobiDBLite consensus disorder prediction 78 94 - -
Pte1g01093 329 CDD homeodomain 161 218 IPR001356 GO:0003677
Pte1g01093 329 SMART HOX_1 159 221 IPR001356 GO:0003677
Pte1g01093 329 ProSiteProfiles 'Homeobox' domain profile. 157 217 IPR001356 GO:0003677
Pte1g01093 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 294 - -
Pte1g01093 329 MobiDBLite consensus disorder prediction 134 164 - -
Pte1g01093 329 MobiDBLite consensus disorder prediction 74 114 - -
Pte1g01093 329 Gene3D - 165 215 - -
Pte1g01093 329 MobiDBLite consensus disorder prediction 31 52 - -
Pte1g01093 329 Pfam Homeodomain 161 215 IPR001356 GO:0003677
Pte1g01093 329 Pfam Homeobox associated leucine zipper 217 250 IPR003106 GO:0006355|GO:0043565
Pte1g01093 329 SUPERFAMILY Homeodomain-like 149 218 IPR009057 -
Pte1g01093 329 PRINTS Lambda-repressor HTH signature 197 213 IPR000047 GO:0003677
Pte1g01093 329 PRINTS Lambda-repressor HTH signature 188 197 IPR000047 GO:0003677
Pte1g01093 329 MobiDBLite consensus disorder prediction 146 164 - -
Pte1g01093 329 ProSitePatterns 'Homeobox' domain signature. 192 215 IPR017970 GO:0000981|GO:0006355
Pte1g01093 329 SMART halz 217 260 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01093 Pte-Chr1 29135967 29137398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01093 146 315 Homeobox Transcription Factor Family AT4G37790 61.628 3.20e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte1g01093 Homeodomain 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01093 K09338 - qsa:O6P43_029477 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01093 1 29135967 29137398 Pte1g01093 1 29135967 29137398 RCT