Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01083 ATGCAGCCTCTGAAGAAGGAGAAGAAGCATCCAAATAATGAAGATGCCAAGAAGAAGGAGCGTCACATTGTTACATGGACTCAAGAGGAGGATGATATACTCAGAGAGCAGATAAGCATCCATGGCACTGAAAATTGGACTATTATTGCATCTAAATTCAAGGACAAAACGACGAGACAGTGTAGAAGAAGATGGTACACCTACTTAAATTCTGATTTCAAGAAAGGTGGATGGTCGCCGGAAGAAGACTTGCTCTTATGTGAGGCTCAGAAAATATTTGGGAACAGATGGACAGAAATAGCTAAAGTGGTTTCAGGCAGAACAGACAATGCTGTGAAGAATCGTTTCTCAACCTTGTGTAAGAAGAGGGCGAAATGTGAAGCACTGGCAAAAGAAAACTCATCCTCCTACACAAGTTCAAATAAGAGAAGGATTAACGTTCTAAGCAATTTCACCACAGATGGAATATCACCTACAAAGAAATTGAGGAGGTCAAATATCTCTGAGATTGCAGAAACCATTGACTTTCGAGAGGAAGCACATAAGCAATGTGAAACCACAATCCGGGACCATGATAGAGCTCCTCTCACAATATTAGCTAAAAATGCTTACAATCTCAGAAATTTGGCTTCCCGGCAGATTAAAGTTGATGGAACCAAGGTCACTGATGGAGTCCATGATGACAAGAATGAAGGAACATTTCTCAAAAAGGATGATCCAAAGATCAGTGCTTTGATGCAACAAGCAGAACTACTAACTTCACTTGCTCAGAAAGTTACCACAGAAATTTCAGATCAGAGTCTTGACAATGCCTGGAAGGTTCTTCAAGATTTTCTGAACCAGGGTAAAGAAACAGATAGCCTCAGATGTAAGATGCCTGATCTACGTTTGGACAATCTTAAAGAAATATTGGAGGATCTGAGGAGCAGTAATGATGGAAGCACTCAGTCTTTGAGGCAACCTAATCTGTATGAGGATTCTCCAGGAAACTCAGAGTACAGCATAGGATCAACTCTCTTGCCCCAATCTGTTGGGGACCAATTACATGATTCACTGCTTCAAGATGCTGAAGTTGATCTGAAAGCTCATGCGGGCGGAGTAGAAAACATTCCTGAAGGAGAGAAGGGTGCTCTTTCTGGTGAAAACATAGACCAAGACATCTTATCAACTTATTGTGACAAAGTAGACAAAGAACAAGTCTTACCTACTACGTTAAGTGCTGAGTTCAGTTCCCCTGTCCAAGTAACCCCCTTGTTCAGGTCCTTGGCAGCAGGGATTCCGAGCCCAAAGTTTTCAGAAAGTGAGAGGAGCTTCCTAATGAAAACTCTTGGAATAGAGTCCCCATCCCCAAATCCATGCAATAACTCTTCACAACCACCACTGTGCAAAAGAGCCATCCTCCAAAGCCTATAA 1413 0.4197 MQPLKKEKKHPNNEDAKKKERHIVTWTQEEDDILREQISIHGTENWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKCEALAKENSSSYTSSNKRRINVLSNFTTDGISPTKKLRRSNISEIAETIDFREEAHKQCETTIRDHDRAPLTILAKNAYNLRNLASRQIKVDGTKVTDGVHDDKNEGTFLKKDDPKISALMQQAELLTSLAQKVTTEISDQSLDNAWKVLQDFLNQGKETDSLRCKMPDLRLDNLKEILEDLRSSNDGSTQSLRQPNLYEDSPGNSEYSIGSTLLPQSVGDQLHDSLLQDAEVDLKAHAGGVENIPEGEKGALSGENIDQDILSTYCDKVDKEQVLPTTLSAEFSSPVQVTPLFRSLAAGIPSPKFSESERSFLMKTLGIESPSPNPCNNSSQPPLCKRAILQSL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01083 470 CDD SANT 78 119 IPR001005 -
Pte1g01083 470 FunFam Transcription factor MYB124 18 74 - -
Pte1g01083 470 MobiDBLite consensus disorder prediction 1 20 - -
Pte1g01083 470 Gene3D - 14 74 - -
Pte1g01083 470 MobiDBLite consensus disorder prediction 308 337 - -
Pte1g01083 470 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pte1g01083 470 CDD SANT 25 69 IPR001005 -
Pte1g01083 470 ProSiteProfiles Myb-like domain profile. 26 69 IPR001005 -
Pte1g01083 470 PANTHER MYB PROTEIN-RELATED 25 145 - -
Pte1g01083 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Pte1g01083 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Pte1g01083 470 Gene3D - 77 148 - -
Pte1g01083 470 Pfam Myb-like DNA-binding domain 26 85 - -
Pte1g01083 470 MobiDBLite consensus disorder prediction 309 337 - -
Pte1g01083 470 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
Pte1g01083 470 SMART sant 74 122 IPR001005 -
Pte1g01083 470 SMART sant 22 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01083 Pte-Chr1 28925035 28932019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01083 64 471 MYB Transcription Factor Family AT1G14350 50.361 2.13e-126 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01083 Myb_DNA-bind_6 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01083 K09422 - qsa:O6P43_033044 583.178