Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01076 ATGGCTTTATACTCTTCACTCTTATCGCCATCACCCAATCTTCTCCGGAAACCCACAAAGCTTTTTGCAGTTGCATCAACTTACATTCTTAAAGCTACAAACTTTGAACCCCCTTTCAAATTTACGACCCCGCCTCTAAGTACAAGTGTCAGACATCCAAAAAGACTCTTTGCAGTAGCCACCATTGCTTCAGCTGAACCTTCATCTGAAGCAGCCAGGCGACTCTTCATTGGTAACATACCTCGTACAGTGGACAATGCTCAGCTTACTCAGATTGTTGAAGAACATGGAGCCATTGAAAAGGCAGAGGTCATGTATGATAAGTATTCTGGAAGGAGTCGCCGGTTTGCATTTGTCACAATGAAGACTGTTGAGGATGCAAATGCAGTAATTGAGAAGCTAAATGGCACTGAAATTGGTGGGCGACAGGTCAAAGTAAATATAACTGAAAAACCTTTACCACAAATTGATTTCTCACTTCTCCAGGATGAGGAATCTCAATTCATTGATAGCCCCCACAAAGTTTATGTAGGAAATTTGGCGAAGACTGTGACCTCAGATACGCTGCAAAGTTTTTTCTCTAAGAAGGGAAAGGTTCTTAGTGCAAAAATTTCACGGGTTCCTGGAACTTCAAAATCAAGTGGGTTTGGCTTTGTTACTTTCTCTACGAATGAGGATGTGGAGGCAGCAATATCATCTTTCAATGACGCTTTGTTGGAAGGACAAAACATTCGAGTAAATAAGGCGTAG 750 0.4173 MALYSSLLSPSPNLLRKPTKLFAVASTYILKATNFEPPFKFTTPPLSTSVRHPKRLFAVATIASAEPSSEAARRLFIGNIPRTVDNAQLTQIVEEHGAIEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGRQVKVNITEKPLPQIDFSLLQDEESQFIDSPHKVYVGNLAKTVTSDTLQSFFSKKGKVLSAKISRVPGTSKSSGFGFVTFSTNEDVEAAISSFNDALLEGQNIRVNKA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01076 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 249 IPR000504 GO:0003723
Pte1g01076 249 Gene3D - 48 157 IPR012677 -
Pte1g01076 249 PANTHER OS02G0815200 PROTEIN 68 248 - -
Pte1g01076 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 245 IPR000504 GO:0003723
Pte1g01076 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 145 IPR000504 GO:0003723
Pte1g01076 249 Gene3D - 161 249 IPR012677 -
Pte1g01076 249 SUPERFAMILY RNA-binding domain, RBD 168 249 IPR035979 GO:0003676
Pte1g01076 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Pte1g01076 249 SUPERFAMILY RNA-binding domain, RBD 61 152 IPR035979 GO:0003676
Pte1g01076 249 CDD RRM1_PSRP2_like 74 153 - -
Pte1g01076 249 SMART rrm1_1 74 147 IPR000504 GO:0003723
Pte1g01076 249 SMART rrm1_1 174 247 IPR000504 GO:0003723
Pte1g01076 249 FunFam 30S ribosomal protein 2, chloroplastic 160 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01076 Pte-Chr1 28553222 28557158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01076 46 249 Eukaryotic Initiation Factors Gene Family AT3G16380 29.245 4.38e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01076 K13126 - qsa:O6P43_029496 340.117