Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01063 ATGTTGGACTACGAATGGGGCAACCCATCAACCATAATTCTCACTGGGAACGAAGAAGATGAAACGACGCACCATGAAGATTCAGACCAAGCTCACCGCCAAATTTTCGACCATTATTCTTCTCAATCTCACACCTTGCTACCTGACCATTTTCTTTCTCACCATCAACCTTCACATGACACCCACCCGACGAACACTTTCTCTCATCACCATAACCACCATCACCATCATCATCACTCGTATAATCCTCAAGCTCACAACCCTATTCACCATTCACTCTTTGATCCACGCGCCTTTACCGGCGCGTCTTCTGCGTCCTACCCACCACCACTGCCACCAACCCCACAACCGCACAACTCCTTGCTCTCTTTAGACCCACTTTTTGTTGTTCCTAAGACTGAGGACTTTACAGCTAATAGTACCAGCAGCAACACAAGACTTGGTCTCAACTTAGGTGGCCGTACCTACTTCTCCACCGATGATGACTTTGTCAACCGTCTCTACCGCCGGTCTAGAGCCGTTGAGCCCGGTTCATCTTCTTCTTCCAACTCACCCAAGTGTCAAGCTGAAGGATGCAATGCCGATCTCTCAAACGCTAAACACTACCATAGAAGACACAAAGTCTGTGAGTTTCACTCCAAGGCTGCTACTGTCATTGCTGCCGGGTTGACTCAGCGATTTTGTCAGCAATGTAGCAGATTCCATCTTCTTGCTGAGTTTGATAATGGCAAACGAAGCTGCAGAAAAAGGATCTCAATCGGACCCGGCTGGGATTTACTCATCATCGGTGACAGTGGCGGTGTCCCCGCCGGATTATTTCAGACCAAGACCATTTCAAAGCACAAGTTCTTCAACGACGACATCAACAAGCTCACCATTTTTCTCAAGTGGGTGCTGAAAAATTAA 906 0.4768 MLDYEWGNPSTIILTGNEEDETTHHEDSDQAHRQIFDHYSSQSHTLLPDHFLSHHQPSHDTHPTNTFSHHHNHHHHHHHSYNPQAHNPIHHSLFDPRAFTGASSASYPPPLPPTPQPHNSLLSLDPLFVVPKTEDFTANSTSSNTRLGLNLGGRTYFSTDDDFVNRLYRRSRAVEPGSSSSSNSPKCQAEGCNADLSNAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLAEFDNGKRSCRKRISIGPGWDLLIIGDSGGVPAGLFQTKTISKHKFFNDDINKLTIFLKWVLKN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01063 301 SUPERFAMILY SBT domain 185 252 IPR036893 GO:0003677|GO:0005634
Pte1g01063 301 FunFam Squamosa promoter-binding-like protein 14 178 248 - -
Pte1g01063 301 ProSiteProfiles Zinc finger SBP-type profile. 184 261 IPR004333 GO:0003677
Pte1g01063 301 Gene3D - 177 248 IPR036893 GO:0003677|GO:0005634
Pte1g01063 301 MobiDBLite consensus disorder prediction 68 84 - -
Pte1g01063 301 MobiDBLite consensus disorder prediction 49 120 - -
Pte1g01063 301 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 250 IPR044817 GO:0003677
Pte1g01063 301 Pfam SBP domain 187 251 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01063 Pte-Chr1 28228261 28230077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01063 1 234 SBP-box Gene Family AT1G02065 47.451 4.74e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte1g01063 SBP 3.1e-27 No_clan