Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g01063 | ATGTTGGACTACGAATGGGGCAACCCATCAACCATAATTCTCACTGGGAACGAAGAAGATGAAACGACGCACCATGAAGATTCAGACCAAGCTCACCGCCAAATTTTCGACCATTATTCTTCTCAATCTCACACCTTGCTACCTGACCATTTTCTTTCTCACCATCAACCTTCACATGACACCCACCCGACGAACACTTTCTCTCATCACCATAACCACCATCACCATCATCATCACTCGTATAATCCTCAAGCTCACAACCCTATTCACCATTCACTCTTTGATCCACGCGCCTTTACCGGCGCGTCTTCTGCGTCCTACCCACCACCACTGCCACCAACCCCACAACCGCACAACTCCTTGCTCTCTTTAGACCCACTTTTTGTTGTTCCTAAGACTGAGGACTTTACAGCTAATAGTACCAGCAGCAACACAAGACTTGGTCTCAACTTAGGTGGCCGTACCTACTTCTCCACCGATGATGACTTTGTCAACCGTCTCTACCGCCGGTCTAGAGCCGTTGAGCCCGGTTCATCTTCTTCTTCCAACTCACCCAAGTGTCAAGCTGAAGGATGCAATGCCGATCTCTCAAACGCTAAACACTACCATAGAAGACACAAAGTCTGTGAGTTTCACTCCAAGGCTGCTACTGTCATTGCTGCCGGGTTGACTCAGCGATTTTGTCAGCAATGTAGCAGATTCCATCTTCTTGCTGAGTTTGATAATGGCAAACGAAGCTGCAGAAAAAGGATCTCAATCGGACCCGGCTGGGATTTACTCATCATCGGTGACAGTGGCGGTGTCCCCGCCGGATTATTTCAGACCAAGACCATTTCAAAGCACAAGTTCTTCAACGACGACATCAACAAGCTCACCATTTTTCTCAAGTGGGTGCTGAAAAATTAA | 906 | 0.4768 | MLDYEWGNPSTIILTGNEEDETTHHEDSDQAHRQIFDHYSSQSHTLLPDHFLSHHQPSHDTHPTNTFSHHHNHHHHHHHSYNPQAHNPIHHSLFDPRAFTGASSASYPPPLPPTPQPHNSLLSLDPLFVVPKTEDFTANSTSSNTRLGLNLGGRTYFSTDDDFVNRLYRRSRAVEPGSSSSSNSPKCQAEGCNADLSNAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLAEFDNGKRSCRKRISIGPGWDLLIIGDSGGVPAGLFQTKTISKHKFFNDDINKLTIFLKWVLKN* | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g01063 | 301 | SUPERFAMILY | SBT domain | 185 | 252 | IPR036893 | GO:0003677|GO:0005634 | |
Pte1g01063 | 301 | FunFam | Squamosa promoter-binding-like protein 14 | 178 | 248 | - | - | |
Pte1g01063 | 301 | ProSiteProfiles | Zinc finger SBP-type profile. | 184 | 261 | IPR004333 | GO:0003677 | |
Pte1g01063 | 301 | Gene3D | - | 177 | 248 | IPR036893 | GO:0003677|GO:0005634 | |
Pte1g01063 | 301 | MobiDBLite | consensus disorder prediction | 68 | 84 | - | - | |
Pte1g01063 | 301 | MobiDBLite | consensus disorder prediction | 49 | 120 | - | - | |
Pte1g01063 | 301 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 75 | 250 | IPR044817 | GO:0003677 | |
Pte1g01063 | 301 | Pfam | SBP domain | 187 | 251 | IPR004333 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g01063 | Pte-Chr1 | 28228261 | 28230077 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g01063 | 1 | 234 | SBP-box Gene Family | AT1G02065 | 47.451 | 4.74e-58 | 185 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Pte1g01063 | SBP | 3.1e-27 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g01063 | - | - | qsa:O6P43_027002 | 311.612 |