Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01062 ATGACAGACCCTCAATCTCGTGTTTTCACTGGATGGTTCAACTTCATGCCTCTCAATTCTCATTGTAGTACTCAGCCATTCGGTTCTTCCTATTACTGGAATAATATTTCTGCCCAAAAAAACACCAAATCCTTCAATCACTTTCAAACTGCTGACAGAACTGCAGCTCCAGCTTCCCCTTCAATACCTCCCACAGCTCTTCCTCTGATAAATTATTTAAGCCCTACAAGTCAGGAGGAGAAAGATGCGCACTCAAAGGCTGCCGTAGTGATGGAAGAGGATAAAAGGAAGAAGATAGACATCCTATCTTGTTCTGCAGATAATTATGATGACTATCATGAAACTGTGAATGTAGCCCTAAGGATAGGCCCTCCTAGTTTCAATTCCGATTCATGTGAAAGGCATAGATGCAAGTCACCGGAAGTAGTACCTGATAAGGAGGAAGGAATAGTCATTGAAGGTTATGCTTTGGAAAACATAAACGAGGGTGAGTTCTGGATTCCGACCCCTTCTCAGATTCTCATCGGTCCAACACAGTTCCCATGCCCTATATGCTGCAAGACCTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACCGAAAAGGACCCGATTCTTTAAGAGGAACTCAACCAACAGCAATGTTAAGGCTTCCATGCTTTTGCTGTGCACCAGAGTGCAAGCACAACATTGATCATCCAAGACCAAGGCCCCTCAAGGATTTCAGGACTCTCCAAACGCATTACAAGAGGAAGCATGGGATCAAACCCTTTATGTGTAGAAAATGTGGCAAAGCAATTGCGGTGAAAGGTGATTGGAGAACACATGAAAAGAATTGTGGGAAGCTGTGGTACTGCACATGTGGTTCAGATTTTAAACATAAAAGGTCTCTTAAAGACCACATTAAAGCTTTTGGGCTAGGCCATGGAGCTCTGGATGTTGAGTACTTCCAGGAAGAGGATGAAGCAGCCTCTGAAGTTGAACATAACGGTGAGGCTTCACTGTAG 1026 0.4366 MTDPQSRVFTGWFNFMPLNSHCSTQPFGSSYYWNNISAQKNTKSFNHFQTADRTAAPASPSIPPTALPLINYLSPTSQEEKDAHSKAAVVMEEDKRKKIDILSCSADNYDDYHETVNVALRIGPPSFNSDSCERHRCKSPEVVPDKEEGIVIEGYALENINEGEFWIPTPSQILIGPTQFPCPICCKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPECKHNIDHPRPRPLKDFRTLQTHYKRKHGIKPFMCRKCGKAIAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIKAFGLGHGALDVEYFQEEDEAASEVEHNGEASL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01062 341 SUPERFAMILY beta-beta-alpha zinc fingers 247 284 IPR036236 -
Pte1g01062 341 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Pte1g01062 341 PANTHER ZINC FINGER PROTEIN WIP2 40 335 IPR043584 GO:0003700|GO:0010468
Pte1g01062 341 FunFam Zinc finger protein WIP2 233 315 - -
Pte1g01062 341 Gene3D Classic Zinc Finger 179 202 - -
Pte1g01062 341 SUPERFAMILY beta-beta-alpha zinc fingers 173 202 IPR036236 -
Pte1g01062 341 Gene3D Classic Zinc Finger 227 312 - -
Pte1g01062 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01062 Pte-Chr1 28148957 28151863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01062 145 334 C2H2 Transcription Factor Family AT3G57670 79.058 9.82e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g01062 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01062 - - qsa:O6P43_001350 443.351