Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte1g01060 | ATGAACGGAAGTAGACAAATGGAGTTCCATTACATAGATACTGGCTTTCCATACACTGTCACTGAAAGTTTCATGGATTTCTTTGAAGGCCTCACTCATGTTCCAGTCGATTATGCTAATTCTGGATCAATGCCTGATCAGGAAAGTGTTTATTGGTCAATGAACATGAACCCCTACAAATTTGTGATGTCTGGTCCTGGAAGTACAGCCTATTGTGCCCCTTACGAGGTGAATAATGATATACCAAGAATGGAAGTCACTAGAGGGGAGTGGGAATACTCTTCCATACTGACAAATGTAGAACCTACAACCACATACTCACTGCCTGCCAGAGAATCTACACCATCTATGCATGCTGTCCCTGAAGAATGTAGTCCAGATCACCATGATTCTAGTAGTCCTCAGGTTGTATGGCAAGACAACGTTGATCCTGATAATATGACTTATGAGGAGCTGCTTGATTTGGGTGATGCAGTTGGAACTCAAAGTCGAGGCCTGCCTCAAGAACTAATTGATTCACTCCCTACCTCAAAATGCAAGTTTGGGAACATGTTCAAACCCAAAAATTATGGGAAGAGATGTGTCATTTGCCAGATGACATACAGAAGAGGTGACCAGCAAATAAAACTGCCATGCGGCCATGTGTACCATGCGGAATGCATCAGCAAATGGCTTAGCATCAACAAGAAATGTCCAGTATGCAACATCGAGGTATTTGGCGAGGAATCAAAGCATTGA | 738 | 0.4282 | MNGSRQMEFHYIDTGFPYTVTESFMDFFEGLTHVPVDYANSGSMPDQESVYWSMNMNPYKFVMSGPGSTAYCAPYEVNNDIPRMEVTRGEWEYSSILTNVEPTTTYSLPARESTPSMHAVPEECSPDHHDSSSPQVVWQDNVDPDNMTYEELLDLGDAVGTQSRGLPQELIDSLPTSKCKFGNMFKPKNYGKRCVICQMTYRRGDQQIKLPCGHVYHAECISKWLSINKKCPVCNIEVFGEESKH* | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte1g01060 | 245 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 239 | IPR013083 | - | |
| Pte1g01060 | 245 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 4 | 241 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
| Pte1g01060 | 245 | FunFam | E3 ubiquitin ligase BIG BROTHER | 156 | 239 | - | - | |
| Pte1g01060 | 245 | Pfam | Ring finger domain | 193 | 235 | IPR001841 | - | |
| Pte1g01060 | 245 | SUPERFAMILY | RING/U-box | 193 | 239 | - | - | |
| Pte1g01060 | 245 | SMART | ring_2 | 194 | 234 | IPR001841 | - | |
| Pte1g01060 | 245 | ProSiteProfiles | Zinc finger RING-type profile. | 194 | 235 | IPR001841 | - | |
| Pte1g01060 | 245 | MobiDBLite | consensus disorder prediction | 110 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte1g01060 | Pte-Chr1 | 28112395 | 28116342 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte1g01060 | 1 | 246 | C3H Transcription Factor Family | AT3G63530 | 50.201 | 1.57e-91 | 268 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte1g01060 | K19045 | - | gmx:100785290 | 390.193 |