Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01055 ATGGGGAAAAACAAAGTAAACAACAACAATAACAAGCTAAGGAAAGGTCTGTGGTCGCCTGAAGAAGATGAGAAGTTGATAAGATACATGCTAACCAATGGTCAAGGATGTTGGAGTGACATTGCTAGGAATGCTGGCCTGCAAAGATGTGGCAAAAGCTGTCGTCTTCGTTGGATTAATTACTTAAGACCCGACCTTAAGCGTGGTGCATTTTCACCCCAAGAAGAAGCCCTTATTGTTCATTTGCATTCAATACTTGGCAACAGGTGGTCTCAGATTGCAGCACGGCTCCCCGGAAGGACAGACAATGAAATTAAGAATTTCTGGAACTCCACGTTGAAGAAAAGGTTGAAGAACAATACTTCCACACCCTCACCCAATAATAACAGTACTGAATCTTCATCTTCCAAGGTAGTAGGCGGAATCATGCCTACAAATGAAAATGACCTAATGTCTATTTTCATGGCCTCAAAATCATCGACGTCTTCGTCCATGCAGCACATGCAAACCATGGTAATTAGCAATCAGTTAGATCCATTCTTAATGCTTAATAACTTGTATAACATGACCAGTGCATCTAGTTTGGCTGATTTGCCTCCATGCACAACTGATCAAGTTGGTGTTGGACATGGCTTCTATGATGATTATCGGATATTGGAGCCTACCTTCAAGGTTGGGTTAGATAGGGACCCATTCTCTCTTCCTCCTCTTGAGAGTAATAGAAACCTCGAAGACAATTATGCTCCAATTGATGTGAAAAGCAATTACAATCATCTCAACAATGATGGTTGCTTCAATAACACTGACCAGAGCTTCAACATAGAGCTGCAAATGCTTGGGCTAGGAAATCATGATCAGGGTGACCAACTAAGAACAGGAGAATGGAATTTGGAGGGTCTCACGCAGGACATTCCCTCTTTCCCTTTCATCGATTACCATATTGTATAG 948 0.4188 MGKNKVNNNNNKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEALIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKNNTSTPSPNNNSTESSSSKVVGGIMPTNENDLMSIFMASKSSTSSSMQHMQTMVISNQLDPFLMLNNLYNMTSASSLADLPPCTTDQVGVGHGFYDDYRILEPTFKVGLDRDPFSLPPLESNRNLEDNYAPIDVKSNYNHLNNDGCFNNTDQSFNIELQMLGLGNHDQGDQLRTGEWNLEGLTQDIPSFPFIDYHIV* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01055 315 FunFam MYB transcription factor 12 68 - -
Pte1g01055 315 CDD SANT 18 62 IPR001005 -
Pte1g01055 315 PANTHER MYB DOMAIN PROTEIN 55 1 240 - -
Pte1g01055 315 Gene3D - 12 68 - -
Pte1g01055 315 MobiDBLite consensus disorder prediction 116 139 - -
Pte1g01055 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pte1g01055 315 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pte1g01055 315 SMART sant 14 64 IPR001005 -
Pte1g01055 315 SMART sant 67 115 IPR001005 -
Pte1g01055 315 Pfam Myb-like DNA-binding domain 18 77 - -
Pte1g01055 315 FunFam Transcription factor MYB46 69 138 - -
Pte1g01055 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte1g01055 315 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pte1g01055 315 CDD SANT 70 113 IPR001005 -
Pte1g01055 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte1g01055 315 Gene3D - 69 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01055 Pte-Chr1 27498660 27500932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01055 7 314 MYB Transcription Factor Family AT3G08500 46.921 1.67e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g01055 Myb_DNA-bind_6 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01055 K09422 - qsu:112038777 392.504